miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13997 3' -52.3 NC_003521.1 + 72410 0.79 0.549743
Target:  5'- aGCGgcGGAGGCACUgaGGAAGAGGGCg -3'
miRNA:   3'- -UGCaaCCUCUGUGGacCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 77236 0.7 0.951821
Target:  5'- uACGggGGAcgacagGGCACacacggggGGAAGGGGGACa -3'
miRNA:   3'- -UGCaaCCU------CUGUGga------CCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 77666 0.68 0.983731
Target:  5'- cCGUcgGGAGACAgCaGGccGGGGGGCa -3'
miRNA:   3'- uGCAa-CCUCUGUgGaCCuuUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 84774 0.7 0.938579
Target:  5'- gACGUUGuuGGCACCgccgaagcaGAGGGAGGGCa -3'
miRNA:   3'- -UGCAACcuCUGUGGac-------CUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 86316 0.66 0.994959
Target:  5'- -gGUUGGccgccaGCACCUGGAugcuGGAGGuCu -3'
miRNA:   3'- ugCAACCuc----UGUGGACCUu---UCUCCuG- -5'
13997 3' -52.3 NC_003521.1 + 86550 0.68 0.977376
Target:  5'- aGCGUUGGAGcAgACCuucugccagaacUGGAGGcAGGGCa -3'
miRNA:   3'- -UGCAACCUC-UgUGG------------ACCUUUcUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 89657 0.67 0.98998
Target:  5'- ----aGGAcGGCACagaggaaGGAGAGAGGACa -3'
miRNA:   3'- ugcaaCCU-CUGUGga-----CCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 90871 0.67 0.985515
Target:  5'- cACGgccgagGGGGACg---GGGAGGGGGACg -3'
miRNA:   3'- -UGCaa----CCUCUGuggaCCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 91317 0.67 0.989589
Target:  5'- uGCGUgugcgcgcGGGGGCACgcgcaggcgaggugCUGGucGGGAGGACg -3'
miRNA:   3'- -UGCAa-------CCUCUGUG--------------GACCu-UUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 98228 0.67 0.987146
Target:  5'- gGCGUgGGAGGCGg--GGAGGcGGGGGCg -3'
miRNA:   3'- -UGCAaCCUCUGUggaCCUUU-CUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 103080 0.66 0.995658
Target:  5'- gGCGagGGcuGCugCUGGGgaugcgAAGGGGGCg -3'
miRNA:   3'- -UGCaaCCucUGugGACCU------UUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 108102 0.66 0.994171
Target:  5'- aGCGcUUGGGGA-ACUUGGGcauGGGGGCu -3'
miRNA:   3'- -UGC-AACCUCUgUGGACCUuu-CUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 111200 0.67 0.9912
Target:  5'- gACGgUGGGcugggcgauGGCGCC-GGAAAGuGGGCg -3'
miRNA:   3'- -UGCaACCU---------CUGUGGaCCUUUCuCCUG- -5'
13997 3' -52.3 NC_003521.1 + 112047 0.66 0.995658
Target:  5'- cGCGUacUGc-GACGCCUGcu-GGAGGACg -3'
miRNA:   3'- -UGCA--ACcuCUGUGGACcuuUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 125700 0.72 0.892832
Target:  5'- gACGUagUGGAGACGCCggcGGucacgacGGGGGCg -3'
miRNA:   3'- -UGCA--ACCUCUGUGGa--CCuuu----CUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 126753 0.68 0.983731
Target:  5'- uGCGUUGGGGACgacgaucuucGCCacguucaggcUGGucGAGGAGGAg -3'
miRNA:   3'- -UGCAACCUCUG----------UGG----------ACC--UUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 129870 0.69 0.959495
Target:  5'- gACGagUGGGuGACgGCCgGGGAGGAGGAg -3'
miRNA:   3'- -UGCa-ACCU-CUG-UGGaCCUUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 135260 0.68 0.974898
Target:  5'- cACGgcGGcGGACGCCgacGAcgAGGAGGACg -3'
miRNA:   3'- -UGCaaCC-UCUGUGGac-CU--UUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 138604 0.66 0.993288
Target:  5'- -aGggGGAGAUGC--GGAGGGAGGAa -3'
miRNA:   3'- ugCaaCCUCUGUGgaCCUUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 150024 0.68 0.977376
Target:  5'- -aGggGGGGGgGgCUGGGGAGGGGGg -3'
miRNA:   3'- ugCaaCCUCUgUgGACCUUUCUCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.