miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14006 3' -57.3 NC_003521.1 + 213147 0.66 0.941574
Target:  5'- cGUGAuCUCCGcGCGCUCG-CUCGUgUg -3'
miRNA:   3'- uCGCU-GAGGC-UGUGAGCaGAGCGgAg -5'
14006 3' -57.3 NC_003521.1 + 234718 0.66 0.937037
Target:  5'- uGCGugUCCGcgacucGCACgacCGUUggUGCCUCu -3'
miRNA:   3'- uCGCugAGGC------UGUGa--GCAGa-GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 116563 0.66 0.937037
Target:  5'- cGCGcCUCCGAaaaguccgaGCUgGUCUCGCg-- -3'
miRNA:   3'- uCGCuGAGGCUg--------UGAgCAGAGCGgag -5'
14006 3' -57.3 NC_003521.1 + 74717 0.66 0.937037
Target:  5'- cAGCGGCUCCcuGCucuccuGCUCGUCgUCgGUCUCc -3'
miRNA:   3'- -UCGCUGAGGc-UG------UGAGCAG-AG-CGGAG- -5'
14006 3' -57.3 NC_003521.1 + 211177 0.66 0.937037
Target:  5'- cGGaGGCgCCG-CGCUCgGUCUCGuCCUCu -3'
miRNA:   3'- -UCgCUGaGGCuGUGAG-CAGAGC-GGAG- -5'
14006 3' -57.3 NC_003521.1 + 106629 0.66 0.937037
Target:  5'- cAGCGcuuCUCCGACGacCUCaUCaUCGCCgUCa -3'
miRNA:   3'- -UCGCu--GAGGCUGU--GAGcAG-AGCGG-AG- -5'
14006 3' -57.3 NC_003521.1 + 72159 0.66 0.932281
Target:  5'- cAGgGAcCUCCGGCGC-CGUCggcaUGcCCUCg -3'
miRNA:   3'- -UCgCU-GAGGCUGUGaGCAGa---GC-GGAG- -5'
14006 3' -57.3 NC_003521.1 + 210826 0.66 0.932281
Target:  5'- cAGCGG-UCCGugGCGCUCGUC-C-CCUCc -3'
miRNA:   3'- -UCGCUgAGGC--UGUGAGCAGaGcGGAG- -5'
14006 3' -57.3 NC_003521.1 + 224016 0.66 0.927305
Target:  5'- cAGCGGCgggcCCGGCGgUCGgggCgggCGCCgUCg -3'
miRNA:   3'- -UCGCUGa---GGCUGUgAGCa--Ga--GCGG-AG- -5'
14006 3' -57.3 NC_003521.1 + 129725 0.66 0.927305
Target:  5'- cGCGGCccgUCGACGCgagcgCGUCcgCGCCg- -3'
miRNA:   3'- uCGCUGa--GGCUGUGa----GCAGa-GCGGag -5'
14006 3' -57.3 NC_003521.1 + 198399 0.66 0.92577
Target:  5'- cGGCGACUCCGGCGUUUGaUUauaaugacgccgguUCGCCa- -3'
miRNA:   3'- -UCGCUGAGGCUGUGAGC-AG--------------AGCGGag -5'
14006 3' -57.3 NC_003521.1 + 16506 0.67 0.916694
Target:  5'- gAGCacgGGCUgCGGCGCUCGgCUCGgCUg -3'
miRNA:   3'- -UCG---CUGAgGCUGUGAGCaGAGCgGAg -5'
14006 3' -57.3 NC_003521.1 + 106309 0.67 0.916694
Target:  5'- aGGCGGCggCCGuGCGCaUCGcCU-GCCUCa -3'
miRNA:   3'- -UCGCUGa-GGC-UGUG-AGCaGAgCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 87400 0.67 0.915585
Target:  5'- aGGUGACgCCGACGCUCacgcccaggggaUCgUCGCCUUu -3'
miRNA:   3'- -UCGCUGaGGCUGUGAGc-----------AG-AGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 180083 0.67 0.91106
Target:  5'- cGGCGACUgCCGcCGC-CGuUCUUGCC-Ca -3'
miRNA:   3'- -UCGCUGA-GGCuGUGaGC-AGAGCGGaG- -5'
14006 3' -57.3 NC_003521.1 + 117241 0.67 0.91106
Target:  5'- cGGCGGCUcCCGGCGC-CG-C-CGCCa- -3'
miRNA:   3'- -UCGCUGA-GGCUGUGaGCaGaGCGGag -5'
14006 3' -57.3 NC_003521.1 + 14404 0.67 0.905208
Target:  5'- cGGCGugUC--GCGCUCGgagaUCGCCUa -3'
miRNA:   3'- -UCGCugAGgcUGUGAGCag--AGCGGAg -5'
14006 3' -57.3 NC_003521.1 + 87951 0.67 0.905208
Target:  5'- cGCGACcugCUGACACg---CUaCGCCUCg -3'
miRNA:   3'- uCGCUGa--GGCUGUGagcaGA-GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 28417 0.67 0.904012
Target:  5'- -aCGcCUCCGACaaccuggGCUUccacaccuccgugGUCUCGCCUCa -3'
miRNA:   3'- ucGCuGAGGCUG-------UGAG-------------CAGAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 127884 0.67 0.899141
Target:  5'- cGCGGCgugcacagCGGCAC-CGUCUCGCUg- -3'
miRNA:   3'- uCGCUGag------GCUGUGaGCAGAGCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.