miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14006 3' -57.3 NC_003521.1 + 104048 0.74 0.536108
Target:  5'- cAGUG-CUCCGACGC-CGUCUgCGCCa- -3'
miRNA:   3'- -UCGCuGAGGCUGUGaGCAGA-GCGGag -5'
14006 3' -57.3 NC_003521.1 + 131464 0.68 0.843238
Target:  5'- cGCG-CUCuCGGC-CUCGUCg-GCCUCc -3'
miRNA:   3'- uCGCuGAG-GCUGuGAGCAGagCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 196461 0.68 0.843238
Target:  5'- cGCGAacCUCCGcugGCACUCGgcccgUUCcGCCUCc -3'
miRNA:   3'- uCGCU--GAGGC---UGUGAGCa----GAG-CGGAG- -5'
14006 3' -57.3 NC_003521.1 + 125348 0.69 0.835398
Target:  5'- cGCGGCccacgcuguucgUCCG-CGCUCGUCgcaguccgCGCUUCa -3'
miRNA:   3'- uCGCUG------------AGGCuGUGAGCAGa-------GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 88436 0.69 0.827389
Target:  5'- cGCGuCUCCaggGAgACgUCGUC-CGCCUCg -3'
miRNA:   3'- uCGCuGAGG---CUgUG-AGCAGaGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 233426 0.69 0.827389
Target:  5'- cGGUGGCUCCGACGgcCUCGacgcggucccuUCUgGCCa- -3'
miRNA:   3'- -UCGCUGAGGCUGU--GAGC-----------AGAgCGGag -5'
14006 3' -57.3 NC_003521.1 + 221709 0.69 0.827389
Target:  5'- cGGCGGC-CCGcCACccgcgUCGUCUC-CCUCc -3'
miRNA:   3'- -UCGCUGaGGCuGUG-----AGCAGAGcGGAG- -5'
14006 3' -57.3 NC_003521.1 + 64534 0.69 0.827389
Target:  5'- cGCGACgacgCCGACGCcCGUCUgcUGCUgcUCa -3'
miRNA:   3'- uCGCUGa---GGCUGUGaGCAGA--GCGG--AG- -5'
14006 3' -57.3 NC_003521.1 + 34213 0.69 0.827389
Target:  5'- gGGCGGCguagaCGGCGCcCGUgUCGCCg- -3'
miRNA:   3'- -UCGCUGag---GCUGUGaGCAgAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 138159 0.69 0.819217
Target:  5'- cGGCGGCUUCGcCGuCUCcUCgCGCCUCu -3'
miRNA:   3'- -UCGCUGAGGCuGU-GAGcAGaGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 127282 0.69 0.810887
Target:  5'- cGCGGCacgUCCGACACgcCGUgguggcgCGCCUCg -3'
miRNA:   3'- uCGCUG---AGGCUGUGa-GCAga-----GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 151330 0.69 0.810046
Target:  5'- gGGUGGCgUCCGagggccuGCGCUUcUUUCGCCUCa -3'
miRNA:   3'- -UCGCUG-AGGC-------UGUGAGcAGAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 69975 0.71 0.730134
Target:  5'- cGCGGagaagCCGACGCgCGUCUCGUCg- -3'
miRNA:   3'- uCGCUga---GGCUGUGaGCAGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 74202 0.71 0.730134
Target:  5'- cGCGGC-CCGACGC-CGUCUucUGCCa- -3'
miRNA:   3'- uCGCUGaGGCUGUGaGCAGA--GCGGag -5'
14006 3' -57.3 NC_003521.1 + 162633 0.71 0.720663
Target:  5'- cGCGcccGCUCCGcACGC-CGUUUCGCCa- -3'
miRNA:   3'- uCGC---UGAGGC-UGUGaGCAGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 95982 0.72 0.672422
Target:  5'- gAGCGAuCUCCG-CugUCGUCUCccgcgGCgCUCa -3'
miRNA:   3'- -UCGCU-GAGGCuGugAGCAGAG-----CG-GAG- -5'
14006 3' -57.3 NC_003521.1 + 40788 0.73 0.623419
Target:  5'- cGGCGACUCCGG-ACUCccggcgcgGUCagcuauUCGCCUCg -3'
miRNA:   3'- -UCGCUGAGGCUgUGAG--------CAG------AGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 146823 0.73 0.594033
Target:  5'- gAGCG-CUCCGccugucugggggGCGcCUCGUcCUCGCCUCc -3'
miRNA:   3'- -UCGCuGAGGC------------UGU-GAGCA-GAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 121031 0.73 0.594033
Target:  5'- cGGCGGCgCCGAC-CUCGUCgccgcugCGCCg- -3'
miRNA:   3'- -UCGCUGaGGCUGuGAGCAGa------GCGGag -5'
14006 3' -57.3 NC_003521.1 + 55035 0.75 0.517214
Target:  5'- cGGCGGCUCCGAgAgacgCGUCUUGCgCUCc -3'
miRNA:   3'- -UCGCUGAGGCUgUga--GCAGAGCG-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.