miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14006 3' -57.3 NC_003521.1 + 189254 1.08 0.004101
Target:  5'- gAGCGACUCCGACACUCGUCUCGCCUCc -3'
miRNA:   3'- -UCGCUGAGGCUGUGAGCAGAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 93930 0.67 0.886369
Target:  5'- cGGCGACUaCCGcugccCGCcgUCGUCUgGCUUCc -3'
miRNA:   3'- -UCGCUGA-GGCu----GUG--AGCAGAgCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 14404 0.67 0.905208
Target:  5'- cGGCGugUC--GCGCUCGgagaUCGCCUa -3'
miRNA:   3'- -UCGCugAGgcUGUGAGCag--AGCGGAg -5'
14006 3' -57.3 NC_003521.1 + 213147 0.66 0.941574
Target:  5'- cGUGAuCUCCGcGCGCUCG-CUCGUgUg -3'
miRNA:   3'- uCGCU-GAGGC-UGUGAGCaGAGCGgAg -5'
14006 3' -57.3 NC_003521.1 + 121366 0.69 0.802409
Target:  5'- cGCGGCUUC-ACACU-GUCgCGCCUCc -3'
miRNA:   3'- uCGCUGAGGcUGUGAgCAGaGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 36818 0.69 0.803264
Target:  5'- cGGCgGACUCgGGCaugaGCUCGUCguccaugucguccuaCGCCUCg -3'
miRNA:   3'- -UCG-CUGAGgCUG----UGAGCAGa--------------GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 27773 0.69 0.822505
Target:  5'- gAGCGcggaggaagaaaccuACUCCGGCccGCUCGgccggCUCGCC-Cg -3'
miRNA:   3'- -UCGC---------------UGAGGCUG--UGAGCa----GAGCGGaG- -5'
14006 3' -57.3 NC_003521.1 + 76873 0.68 0.843238
Target:  5'- cGGCGuccGCggCCGAgACUCcucCUCGCCUCu -3'
miRNA:   3'- -UCGC---UGa-GGCUgUGAGca-GAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 138334 0.68 0.872771
Target:  5'- uGCGGCUgCgCGACGg-CGUCUCggGCCUCu -3'
miRNA:   3'- uCGCUGA-G-GCUGUgaGCAGAG--CGGAG- -5'
14006 3' -57.3 NC_003521.1 + 201464 0.67 0.886369
Target:  5'- cAGC--CUUCGACAUUC-UCUCGCCUa -3'
miRNA:   3'- -UCGcuGAGGCUGUGAGcAGAGCGGAg -5'
14006 3' -57.3 NC_003521.1 + 16736 0.68 0.879672
Target:  5'- cGGCGACcgCCGGCGCgcgCGcC-CGCCg- -3'
miRNA:   3'- -UCGCUGa-GGCUGUGa--GCaGaGCGGag -5'
14006 3' -57.3 NC_003521.1 + 127729 0.68 0.85838
Target:  5'- gAGCcGCUCCuGCACccggcggcCGUCUgCGCCUCg -3'
miRNA:   3'- -UCGcUGAGGcUGUGa-------GCAGA-GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 223613 0.73 0.594033
Target:  5'- cGCGACggCGACGCUCuucUCUCGCCa- -3'
miRNA:   3'- uCGCUGagGCUGUGAGc--AGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 47538 0.68 0.879672
Target:  5'- cGcCGACUCCGACGCcCGUCcCGgCa- -3'
miRNA:   3'- uC-GCUGAGGCUGUGaGCAGaGCgGag -5'
14006 3' -57.3 NC_003521.1 + 26920 0.7 0.776154
Target:  5'- cGCG-CUCCaGACACgcucgCGaCUCGCCUUc -3'
miRNA:   3'- uCGCuGAGG-CUGUGa----GCaGAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 206606 0.68 0.843238
Target:  5'- cGGCGACaCgGGCGC-CGUCUaCGCCg- -3'
miRNA:   3'- -UCGCUGaGgCUGUGaGCAGA-GCGGag -5'
14006 3' -57.3 NC_003521.1 + 98856 0.68 0.882375
Target:  5'- uGCaGCUCCuGACGCUCGUCgcccagcaggugggCGCC-Ca -3'
miRNA:   3'- uCGcUGAGG-CUGUGAGCAGa-------------GCGGaG- -5'
14006 3' -57.3 NC_003521.1 + 11556 0.67 0.89286
Target:  5'- -aCGcCUCCGGCGC-CGUCgugCGCCg- -3'
miRNA:   3'- ucGCuGAGGCUGUGaGCAGa--GCGGag -5'
14006 3' -57.3 NC_003521.1 + 140567 0.7 0.785035
Target:  5'- cGGCGGCggCGACAgCUCGUCgUCGggcaCCUCg -3'
miRNA:   3'- -UCGCUGagGCUGU-GAGCAG-AGC----GGAG- -5'
14006 3' -57.3 NC_003521.1 + 138037 0.69 0.819217
Target:  5'- uGGCGGCcgCCGGCGC-CGUCaUCGCg-- -3'
miRNA:   3'- -UCGCUGa-GGCUGUGaGCAG-AGCGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.