miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14006 3' -57.3 NC_003521.1 + 189254 1.08 0.004101
Target:  5'- gAGCGACUCCGACACUCGUCUCGCCUCc -3'
miRNA:   3'- -UCGCUGAGGCUGUGAGCAGAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 55035 0.75 0.517214
Target:  5'- cGGCGGCUCCGAgAgacgCGUCUUGCgCUCc -3'
miRNA:   3'- -UCGCUGAGGCUgUga--GCAGAGCG-GAG- -5'
14006 3' -57.3 NC_003521.1 + 104048 0.74 0.536108
Target:  5'- cAGUG-CUCCGACGC-CGUCUgCGCCa- -3'
miRNA:   3'- -UCGCuGAGGCUGUGaGCAGA-GCGGag -5'
14006 3' -57.3 NC_003521.1 + 121031 0.73 0.594033
Target:  5'- cGGCGGCgCCGAC-CUCGUCgccgcugCGCCg- -3'
miRNA:   3'- -UCGCUGaGGCUGuGAGCAGa------GCGGag -5'
14006 3' -57.3 NC_003521.1 + 223613 0.73 0.594033
Target:  5'- cGCGACggCGACGCUCuucUCUCGCCa- -3'
miRNA:   3'- uCGCUGagGCUGUGAGc--AGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 146823 0.73 0.594033
Target:  5'- gAGCG-CUCCGccugucugggggGCGcCUCGUcCUCGCCUCc -3'
miRNA:   3'- -UCGCuGAGGC------------UGU-GAGCA-GAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 40788 0.73 0.623419
Target:  5'- cGGCGACUCCGG-ACUCccggcgcgGUCagcuauUCGCCUCg -3'
miRNA:   3'- -UCGCUGAGGCUgUGAG--------CAG------AGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 95982 0.72 0.672422
Target:  5'- gAGCGAuCUCCG-CugUCGUCUCccgcgGCgCUCa -3'
miRNA:   3'- -UCGCU-GAGGCuGugAGCAGAG-----CG-GAG- -5'
14006 3' -57.3 NC_003521.1 + 162633 0.71 0.720663
Target:  5'- cGCGcccGCUCCGcACGC-CGUUUCGCCa- -3'
miRNA:   3'- uCGC---UGAGGC-UGUGaGCAGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 74202 0.71 0.730134
Target:  5'- cGCGGC-CCGACGC-CGUCUucUGCCa- -3'
miRNA:   3'- uCGCUGaGGCUGUGaGCAGA--GCGGag -5'
14006 3' -57.3 NC_003521.1 + 69975 0.71 0.730134
Target:  5'- cGCGGagaagCCGACGCgCGUCUCGUCg- -3'
miRNA:   3'- uCGCUga---GGCUGUGaGCAGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 26920 0.7 0.776154
Target:  5'- cGCG-CUCCaGACACgcucgCGaCUCGCCUUc -3'
miRNA:   3'- uCGCuGAGG-CUGUGa----GCaGAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 140567 0.7 0.785035
Target:  5'- cGGCGGCggCGACAgCUCGUCgUCGggcaCCUCg -3'
miRNA:   3'- -UCGCUGagGCUGU-GAGCAG-AGC----GGAG- -5'
14006 3' -57.3 NC_003521.1 + 121366 0.69 0.802409
Target:  5'- cGCGGCUUC-ACACU-GUCgCGCCUCc -3'
miRNA:   3'- uCGCUGAGGcUGUGAgCAGaGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 36818 0.69 0.803264
Target:  5'- cGGCgGACUCgGGCaugaGCUCGUCguccaugucguccuaCGCCUCg -3'
miRNA:   3'- -UCG-CUGAGgCUG----UGAGCAGa--------------GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 151330 0.69 0.810046
Target:  5'- gGGUGGCgUCCGagggccuGCGCUUcUUUCGCCUCa -3'
miRNA:   3'- -UCGCUG-AGGC-------UGUGAGcAGAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 127282 0.69 0.810887
Target:  5'- cGCGGCacgUCCGACACgcCGUgguggcgCGCCUCg -3'
miRNA:   3'- uCGCUG---AGGCUGUGa-GCAga-----GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 138037 0.69 0.819217
Target:  5'- uGGCGGCcgCCGGCGC-CGUCaUCGCg-- -3'
miRNA:   3'- -UCGCUGa-GGCUGUGaGCAG-AGCGgag -5'
14006 3' -57.3 NC_003521.1 + 138159 0.69 0.819217
Target:  5'- cGGCGGCUUCGcCGuCUCcUCgCGCCUCu -3'
miRNA:   3'- -UCGCUGAGGCuGU-GAGcAGaGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 27773 0.69 0.822505
Target:  5'- gAGCGcggaggaagaaaccuACUCCGGCccGCUCGgccggCUCGCC-Cg -3'
miRNA:   3'- -UCGC---------------UGAGGCUG--UGAGCa----GAGCGGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.