miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14006 3' -57.3 NC_003521.1 + 34213 0.69 0.827389
Target:  5'- gGGCGGCguagaCGGCGCcCGUgUCGCCg- -3'
miRNA:   3'- -UCGCUGag---GCUGUGaGCAgAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 221709 0.69 0.827389
Target:  5'- cGGCGGC-CCGcCACccgcgUCGUCUC-CCUCc -3'
miRNA:   3'- -UCGCUGaGGCuGUG-----AGCAGAGcGGAG- -5'
14006 3' -57.3 NC_003521.1 + 64534 0.69 0.827389
Target:  5'- cGCGACgacgCCGACGCcCGUCUgcUGCUgcUCa -3'
miRNA:   3'- uCGCUGa---GGCUGUGaGCAGA--GCGG--AG- -5'
14006 3' -57.3 NC_003521.1 + 233426 0.69 0.827389
Target:  5'- cGGUGGCUCCGACGgcCUCGacgcggucccuUCUgGCCa- -3'
miRNA:   3'- -UCGCUGAGGCUGU--GAGC-----------AGAgCGGag -5'
14006 3' -57.3 NC_003521.1 + 88436 0.69 0.827389
Target:  5'- cGCGuCUCCaggGAgACgUCGUC-CGCCUCg -3'
miRNA:   3'- uCGCuGAGG---CUgUG-AGCAGaGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 125348 0.69 0.835398
Target:  5'- cGCGGCccacgcuguucgUCCG-CGCUCGUCgcaguccgCGCUUCa -3'
miRNA:   3'- uCGCUG------------AGGCuGUGAGCAGa-------GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 206606 0.68 0.843238
Target:  5'- cGGCGACaCgGGCGC-CGUCUaCGCCg- -3'
miRNA:   3'- -UCGCUGaGgCUGUGaGCAGA-GCGGag -5'
14006 3' -57.3 NC_003521.1 + 76873 0.68 0.843238
Target:  5'- cGGCGuccGCggCCGAgACUCcucCUCGCCUCu -3'
miRNA:   3'- -UCGC---UGa-GGCUgUGAGca-GAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 196461 0.68 0.843238
Target:  5'- cGCGAacCUCCGcugGCACUCGgcccgUUCcGCCUCc -3'
miRNA:   3'- uCGCU--GAGGC---UGUGAGCa----GAG-CGGAG- -5'
14006 3' -57.3 NC_003521.1 + 131464 0.68 0.843238
Target:  5'- cGCG-CUCuCGGC-CUCGUCg-GCCUCc -3'
miRNA:   3'- uCGCuGAG-GCUGuGAGCAGagCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 145279 0.68 0.85838
Target:  5'- cGGCGGCcagCUcGCGCgccggCGUCUCGCCg- -3'
miRNA:   3'- -UCGCUGa--GGcUGUGa----GCAGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 127729 0.68 0.85838
Target:  5'- gAGCcGCUCCuGCACccggcggcCGUCUgCGCCUCg -3'
miRNA:   3'- -UCGcUGAGGcUGUGa-------GCAGA-GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 113760 0.68 0.865673
Target:  5'- cGGUGGCccugcCCGGCACcgCGUCUCcauCCUCg -3'
miRNA:   3'- -UCGCUGa----GGCUGUGa-GCAGAGc--GGAG- -5'
14006 3' -57.3 NC_003521.1 + 213079 0.68 0.872771
Target:  5'- gGGaCGACaUCgCGGCGCUCGuUCUCcucugucuuucuGCCUCu -3'
miRNA:   3'- -UC-GCUG-AG-GCUGUGAGC-AGAG------------CGGAG- -5'
14006 3' -57.3 NC_003521.1 + 138334 0.68 0.872771
Target:  5'- uGCGGCUgCgCGACGg-CGUCUCggGCCUCu -3'
miRNA:   3'- uCGCUGA-G-GCUGUgaGCAGAG--CGGAG- -5'
14006 3' -57.3 NC_003521.1 + 16736 0.68 0.879672
Target:  5'- cGGCGACcgCCGGCGCgcgCGcC-CGCCg- -3'
miRNA:   3'- -UCGCUGa-GGCUGUGa--GCaGaGCGGag -5'
14006 3' -57.3 NC_003521.1 + 47538 0.68 0.879672
Target:  5'- cGcCGACUCCGACGCcCGUCcCGgCa- -3'
miRNA:   3'- uC-GCUGAGGCUGUGaGCAGaGCgGag -5'
14006 3' -57.3 NC_003521.1 + 98856 0.68 0.882375
Target:  5'- uGCaGCUCCuGACGCUCGUCgcccagcaggugggCGCC-Ca -3'
miRNA:   3'- uCGcUGAGG-CUGUGAGCAGa-------------GCGGaG- -5'
14006 3' -57.3 NC_003521.1 + 92589 0.67 0.886369
Target:  5'- uGGCGGCUCCGgguugggugugGCAUcCGgucCUCGCCg- -3'
miRNA:   3'- -UCGCUGAGGC-----------UGUGaGCa--GAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 46454 0.67 0.886369
Target:  5'- cGGgGGCUggUCGGC-CUCGUCgUCGuCCUCg -3'
miRNA:   3'- -UCgCUGA--GGCUGuGAGCAG-AGC-GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.