miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14006 3' -57.3 NC_003521.1 + 190455 0.67 0.899141
Target:  5'- aAGCGGCUCCcaguuCACguagaucucgUCGUUUCGCCcCg -3'
miRNA:   3'- -UCGCUGAGGcu---GUG----------AGCAGAGCGGaG- -5'
14006 3' -57.3 NC_003521.1 + 92589 0.67 0.886369
Target:  5'- uGGCGGCUCCGgguugggugugGCAUcCGgucCUCGCCg- -3'
miRNA:   3'- -UCGCUGAGGC-----------UGUGaGCa--GAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 46454 0.67 0.886369
Target:  5'- cGGgGGCUggUCGGC-CUCGUCgUCGuCCUCg -3'
miRNA:   3'- -UCgCUGA--GGCUGuGAGCAG-AGC-GGAG- -5'
14006 3' -57.3 NC_003521.1 + 87951 0.67 0.905208
Target:  5'- cGCGACcugCUGACACg---CUaCGCCUCg -3'
miRNA:   3'- uCGCUGa--GGCUGUGagcaGA-GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 93930 0.67 0.886369
Target:  5'- cGGCGACUaCCGcugccCGCcgUCGUCUgGCUUCc -3'
miRNA:   3'- -UCGCUGA-GGCu----GUG--AGCAGAgCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 11556 0.67 0.89286
Target:  5'- -aCGcCUCCGGCGC-CGUCgugCGCCg- -3'
miRNA:   3'- ucGCuGAGGCUGUGaGCAGa--GCGGag -5'
14006 3' -57.3 NC_003521.1 + 14404 0.67 0.905208
Target:  5'- cGGCGugUC--GCGCUCGgagaUCGCCUa -3'
miRNA:   3'- -UCGCugAGgcUGUGAGCag--AGCGGAg -5'
14006 3' -57.3 NC_003521.1 + 16506 0.67 0.916694
Target:  5'- gAGCacgGGCUgCGGCGCUCGgCUCGgCUg -3'
miRNA:   3'- -UCG---CUGAgGCUGUGAGCaGAGCgGAg -5'
14006 3' -57.3 NC_003521.1 + 106309 0.67 0.916694
Target:  5'- aGGCGGCggCCGuGCGCaUCGcCU-GCCUCa -3'
miRNA:   3'- -UCGCUGa-GGC-UGUG-AGCaGAgCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 133582 0.67 0.886369
Target:  5'- gAGCGACaUCCcGCGCUCuUCgaGCCUCc -3'
miRNA:   3'- -UCGCUG-AGGcUGUGAGcAGagCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 201464 0.67 0.886369
Target:  5'- cAGC--CUUCGACAUUC-UCUCGCCUa -3'
miRNA:   3'- -UCGcuGAGGCUGUGAGcAGAGCGGAg -5'
14006 3' -57.3 NC_003521.1 + 16736 0.68 0.879672
Target:  5'- cGGCGACcgCCGGCGCgcgCGcC-CGCCg- -3'
miRNA:   3'- -UCGCUGa-GGCUGUGa--GCaGaGCGGag -5'
14006 3' -57.3 NC_003521.1 + 206606 0.68 0.843238
Target:  5'- cGGCGACaCgGGCGC-CGUCUaCGCCg- -3'
miRNA:   3'- -UCGCUGaGgCUGUGaGCAGA-GCGGag -5'
14006 3' -57.3 NC_003521.1 + 47538 0.68 0.879672
Target:  5'- cGcCGACUCCGACGCcCGUCcCGgCa- -3'
miRNA:   3'- uC-GCUGAGGCUGUGaGCAGaGCgGag -5'
14006 3' -57.3 NC_003521.1 + 76873 0.68 0.843238
Target:  5'- cGGCGuccGCggCCGAgACUCcucCUCGCCUCu -3'
miRNA:   3'- -UCGC---UGa-GGCUgUGAGca-GAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 145279 0.68 0.85838
Target:  5'- cGGCGGCcagCUcGCGCgccggCGUCUCGCCg- -3'
miRNA:   3'- -UCGCUGa--GGcUGUGa----GCAGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 213079 0.68 0.872771
Target:  5'- gGGaCGACaUCgCGGCGCUCGuUCUCcucugucuuucuGCCUCu -3'
miRNA:   3'- -UC-GCUG-AG-GCUGUGAGC-AGAG------------CGGAG- -5'
14006 3' -57.3 NC_003521.1 + 131464 0.68 0.843238
Target:  5'- cGCG-CUCuCGGC-CUCGUCg-GCCUCc -3'
miRNA:   3'- uCGCuGAG-GCUGuGAGCAGagCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 196461 0.68 0.843238
Target:  5'- cGCGAacCUCCGcugGCACUCGgcccgUUCcGCCUCc -3'
miRNA:   3'- uCGCU--GAGGC---UGUGAGCa----GAG-CGGAG- -5'
14006 3' -57.3 NC_003521.1 + 98856 0.68 0.882375
Target:  5'- uGCaGCUCCuGACGCUCGUCgcccagcaggugggCGCC-Ca -3'
miRNA:   3'- uCGcUGAGG-CUGUGAGCAGa-------------GCGGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.