miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14006 3' -57.3 NC_003521.1 + 87400 0.67 0.915585
Target:  5'- aGGUGACgCCGACGCUCacgcccaggggaUCgUCGCCUUu -3'
miRNA:   3'- -UCGCUGaGGCUGUGAGc-----------AG-AGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 87951 0.67 0.905208
Target:  5'- cGCGACcugCUGACACg---CUaCGCCUCg -3'
miRNA:   3'- uCGCUGa--GGCUGUGagcaGA-GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 88436 0.69 0.827389
Target:  5'- cGCGuCUCCaggGAgACgUCGUC-CGCCUCg -3'
miRNA:   3'- uCGCuGAGG---CUgUG-AGCAGaGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 92589 0.67 0.886369
Target:  5'- uGGCGGCUCCGgguugggugugGCAUcCGgucCUCGCCg- -3'
miRNA:   3'- -UCGCUGAGGC-----------UGUGaGCa--GAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 93930 0.67 0.886369
Target:  5'- cGGCGACUaCCGcugccCGCcgUCGUCUgGCUUCc -3'
miRNA:   3'- -UCGCUGA-GGCu----GUG--AGCAGAgCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 95982 0.72 0.672422
Target:  5'- gAGCGAuCUCCG-CugUCGUCUCccgcgGCgCUCa -3'
miRNA:   3'- -UCGCU-GAGGCuGugAGCAGAG-----CG-GAG- -5'
14006 3' -57.3 NC_003521.1 + 98856 0.68 0.882375
Target:  5'- uGCaGCUCCuGACGCUCGUCgcccagcaggugggCGCC-Ca -3'
miRNA:   3'- uCGcUGAGG-CUGUGAGCAGa-------------GCGGaG- -5'
14006 3' -57.3 NC_003521.1 + 104048 0.74 0.536108
Target:  5'- cAGUG-CUCCGACGC-CGUCUgCGCCa- -3'
miRNA:   3'- -UCGCuGAGGCUGUGaGCAGA-GCGGag -5'
14006 3' -57.3 NC_003521.1 + 106309 0.67 0.916694
Target:  5'- aGGCGGCggCCGuGCGCaUCGcCU-GCCUCa -3'
miRNA:   3'- -UCGCUGa-GGC-UGUG-AGCaGAgCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 106629 0.66 0.937037
Target:  5'- cAGCGcuuCUCCGACGacCUCaUCaUCGCCgUCa -3'
miRNA:   3'- -UCGCu--GAGGCUGU--GAGcAG-AGCGG-AG- -5'
14006 3' -57.3 NC_003521.1 + 112370 0.67 0.886369
Target:  5'- cGGCGGCUgCGGCGuCUCGUC-CaCCUg -3'
miRNA:   3'- -UCGCUGAgGCUGU-GAGCAGaGcGGAg -5'
14006 3' -57.3 NC_003521.1 + 113760 0.68 0.865673
Target:  5'- cGGUGGCccugcCCGGCACcgCGUCUCcauCCUCg -3'
miRNA:   3'- -UCGCUGa----GGCUGUGa-GCAGAGc--GGAG- -5'
14006 3' -57.3 NC_003521.1 + 116563 0.66 0.937037
Target:  5'- cGCGcCUCCGAaaaguccgaGCUgGUCUCGCg-- -3'
miRNA:   3'- uCGCuGAGGCUg--------UGAgCAGAGCGgag -5'
14006 3' -57.3 NC_003521.1 + 117241 0.67 0.91106
Target:  5'- cGGCGGCUcCCGGCGC-CG-C-CGCCa- -3'
miRNA:   3'- -UCGCUGA-GGCUGUGaGCaGaGCGGag -5'
14006 3' -57.3 NC_003521.1 + 121031 0.73 0.594033
Target:  5'- cGGCGGCgCCGAC-CUCGUCgccgcugCGCCg- -3'
miRNA:   3'- -UCGCUGaGGCUGuGAGCAGa------GCGGag -5'
14006 3' -57.3 NC_003521.1 + 121366 0.69 0.802409
Target:  5'- cGCGGCUUC-ACACU-GUCgCGCCUCc -3'
miRNA:   3'- uCGCUGAGGcUGUGAgCAGaGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 122093 0.67 0.89286
Target:  5'- cAGCGACUUggucucgugCGGCugcaGCggCGUCUCGCCg- -3'
miRNA:   3'- -UCGCUGAG---------GCUG----UGa-GCAGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 125348 0.69 0.835398
Target:  5'- cGCGGCccacgcuguucgUCCG-CGCUCGUCgcaguccgCGCUUCa -3'
miRNA:   3'- uCGCUG------------AGGCuGUGAGCAGa-------GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 127282 0.69 0.810887
Target:  5'- cGCGGCacgUCCGACACgcCGUgguggcgCGCCUCg -3'
miRNA:   3'- uCGCUG---AGGCUGUGa-GCAga-----GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 127729 0.68 0.85838
Target:  5'- gAGCcGCUCCuGCACccggcggcCGUCUgCGCCUCg -3'
miRNA:   3'- -UCGcUGAGGcUGUGa-------GCAGA-GCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.