miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14006 3' -57.3 NC_003521.1 + 140567 0.7 0.785035
Target:  5'- cGGCGGCggCGACAgCUCGUCgUCGggcaCCUCg -3'
miRNA:   3'- -UCGCUGagGCUGU-GAGCAG-AGC----GGAG- -5'
14006 3' -57.3 NC_003521.1 + 138334 0.68 0.872771
Target:  5'- uGCGGCUgCgCGACGg-CGUCUCggGCCUCu -3'
miRNA:   3'- uCGCUGA-G-GCUGUgaGCAGAG--CGGAG- -5'
14006 3' -57.3 NC_003521.1 + 138159 0.69 0.819217
Target:  5'- cGGCGGCUUCGcCGuCUCcUCgCGCCUCu -3'
miRNA:   3'- -UCGCUGAGGCuGU-GAGcAGaGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 138037 0.69 0.819217
Target:  5'- uGGCGGCcgCCGGCGC-CGUCaUCGCg-- -3'
miRNA:   3'- -UCGCUGa-GGCUGUGaGCAG-AGCGgag -5'
14006 3' -57.3 NC_003521.1 + 137134 0.67 0.89286
Target:  5'- cGCG-UUCgGACGCUCGgaCUCGCC-Cg -3'
miRNA:   3'- uCGCuGAGgCUGUGAGCa-GAGCGGaG- -5'
14006 3' -57.3 NC_003521.1 + 133582 0.67 0.886369
Target:  5'- gAGCGACaUCCcGCGCUCuUCgaGCCUCc -3'
miRNA:   3'- -UCGCUG-AGGcUGUGAGcAGagCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 131464 0.68 0.843238
Target:  5'- cGCG-CUCuCGGC-CUCGUCg-GCCUCc -3'
miRNA:   3'- uCGCuGAG-GCUGuGAGCAGagCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 129725 0.66 0.927305
Target:  5'- cGCGGCccgUCGACGCgagcgCGUCcgCGCCg- -3'
miRNA:   3'- uCGCUGa--GGCUGUGa----GCAGa-GCGGag -5'
14006 3' -57.3 NC_003521.1 + 127884 0.67 0.899141
Target:  5'- cGCGGCgugcacagCGGCAC-CGUCUCGCUg- -3'
miRNA:   3'- uCGCUGag------GCUGUGaGCAGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 127729 0.68 0.85838
Target:  5'- gAGCcGCUCCuGCACccggcggcCGUCUgCGCCUCg -3'
miRNA:   3'- -UCGcUGAGGcUGUGa-------GCAGA-GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 127282 0.69 0.810887
Target:  5'- cGCGGCacgUCCGACACgcCGUgguggcgCGCCUCg -3'
miRNA:   3'- uCGCUG---AGGCUGUGa-GCAga-----GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 125348 0.69 0.835398
Target:  5'- cGCGGCccacgcuguucgUCCG-CGCUCGUCgcaguccgCGCUUCa -3'
miRNA:   3'- uCGCUG------------AGGCuGUGAGCAGa-------GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 122093 0.67 0.89286
Target:  5'- cAGCGACUUggucucgugCGGCugcaGCggCGUCUCGCCg- -3'
miRNA:   3'- -UCGCUGAG---------GCUG----UGa-GCAGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 121366 0.69 0.802409
Target:  5'- cGCGGCUUC-ACACU-GUCgCGCCUCc -3'
miRNA:   3'- uCGCUGAGGcUGUGAgCAGaGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 121031 0.73 0.594033
Target:  5'- cGGCGGCgCCGAC-CUCGUCgccgcugCGCCg- -3'
miRNA:   3'- -UCGCUGaGGCUGuGAGCAGa------GCGGag -5'
14006 3' -57.3 NC_003521.1 + 117241 0.67 0.91106
Target:  5'- cGGCGGCUcCCGGCGC-CG-C-CGCCa- -3'
miRNA:   3'- -UCGCUGA-GGCUGUGaGCaGaGCGGag -5'
14006 3' -57.3 NC_003521.1 + 116563 0.66 0.937037
Target:  5'- cGCGcCUCCGAaaaguccgaGCUgGUCUCGCg-- -3'
miRNA:   3'- uCGCuGAGGCUg--------UGAgCAGAGCGgag -5'
14006 3' -57.3 NC_003521.1 + 113760 0.68 0.865673
Target:  5'- cGGUGGCccugcCCGGCACcgCGUCUCcauCCUCg -3'
miRNA:   3'- -UCGCUGa----GGCUGUGa-GCAGAGc--GGAG- -5'
14006 3' -57.3 NC_003521.1 + 112370 0.67 0.886369
Target:  5'- cGGCGGCUgCGGCGuCUCGUC-CaCCUg -3'
miRNA:   3'- -UCGCUGAgGCUGU-GAGCAGaGcGGAg -5'
14006 3' -57.3 NC_003521.1 + 106629 0.66 0.937037
Target:  5'- cAGCGcuuCUCCGACGacCUCaUCaUCGCCgUCa -3'
miRNA:   3'- -UCGCu--GAGGCUGU--GAGcAG-AGCGG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.