miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14006 3' -57.3 NC_003521.1 + 234718 0.66 0.937037
Target:  5'- uGCGugUCCGcgacucGCACgacCGUUggUGCCUCu -3'
miRNA:   3'- uCGCugAGGC------UGUGa--GCAGa-GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 233426 0.69 0.827389
Target:  5'- cGGUGGCUCCGACGgcCUCGacgcggucccuUCUgGCCa- -3'
miRNA:   3'- -UCGCUGAGGCUGU--GAGC-----------AGAgCGGag -5'
14006 3' -57.3 NC_003521.1 + 224016 0.66 0.927305
Target:  5'- cAGCGGCgggcCCGGCGgUCGgggCgggCGCCgUCg -3'
miRNA:   3'- -UCGCUGa---GGCUGUgAGCa--Ga--GCGG-AG- -5'
14006 3' -57.3 NC_003521.1 + 223613 0.73 0.594033
Target:  5'- cGCGACggCGACGCUCuucUCUCGCCa- -3'
miRNA:   3'- uCGCUGagGCUGUGAGc--AGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 221709 0.69 0.827389
Target:  5'- cGGCGGC-CCGcCACccgcgUCGUCUC-CCUCc -3'
miRNA:   3'- -UCGCUGaGGCuGUG-----AGCAGAGcGGAG- -5'
14006 3' -57.3 NC_003521.1 + 213147 0.66 0.941574
Target:  5'- cGUGAuCUCCGcGCGCUCG-CUCGUgUg -3'
miRNA:   3'- uCGCU-GAGGC-UGUGAGCaGAGCGgAg -5'
14006 3' -57.3 NC_003521.1 + 213079 0.68 0.872771
Target:  5'- gGGaCGACaUCgCGGCGCUCGuUCUCcucugucuuucuGCCUCu -3'
miRNA:   3'- -UC-GCUG-AG-GCUGUGAGC-AGAG------------CGGAG- -5'
14006 3' -57.3 NC_003521.1 + 211177 0.66 0.937037
Target:  5'- cGGaGGCgCCG-CGCUCgGUCUCGuCCUCu -3'
miRNA:   3'- -UCgCUGaGGCuGUGAG-CAGAGC-GGAG- -5'
14006 3' -57.3 NC_003521.1 + 210826 0.66 0.932281
Target:  5'- cAGCGG-UCCGugGCGCUCGUC-C-CCUCc -3'
miRNA:   3'- -UCGCUgAGGC--UGUGAGCAGaGcGGAG- -5'
14006 3' -57.3 NC_003521.1 + 206606 0.68 0.843238
Target:  5'- cGGCGACaCgGGCGC-CGUCUaCGCCg- -3'
miRNA:   3'- -UCGCUGaGgCUGUGaGCAGA-GCGGag -5'
14006 3' -57.3 NC_003521.1 + 201464 0.67 0.886369
Target:  5'- cAGC--CUUCGACAUUC-UCUCGCCUa -3'
miRNA:   3'- -UCGcuGAGGCUGUGAGcAGAGCGGAg -5'
14006 3' -57.3 NC_003521.1 + 198399 0.66 0.92577
Target:  5'- cGGCGACUCCGGCGUUUGaUUauaaugacgccgguUCGCCa- -3'
miRNA:   3'- -UCGCUGAGGCUGUGAGC-AG--------------AGCGGag -5'
14006 3' -57.3 NC_003521.1 + 196461 0.68 0.843238
Target:  5'- cGCGAacCUCCGcugGCACUCGgcccgUUCcGCCUCc -3'
miRNA:   3'- uCGCU--GAGGC---UGUGAGCa----GAG-CGGAG- -5'
14006 3' -57.3 NC_003521.1 + 190455 0.67 0.899141
Target:  5'- aAGCGGCUCCcaguuCACguagaucucgUCGUUUCGCCcCg -3'
miRNA:   3'- -UCGCUGAGGcu---GUG----------AGCAGAGCGGaG- -5'
14006 3' -57.3 NC_003521.1 + 189254 1.08 0.004101
Target:  5'- gAGCGACUCCGACACUCGUCUCGCCUCc -3'
miRNA:   3'- -UCGCUGAGGCUGUGAGCAGAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 180083 0.67 0.91106
Target:  5'- cGGCGACUgCCGcCGC-CGuUCUUGCC-Ca -3'
miRNA:   3'- -UCGCUGA-GGCuGUGaGC-AGAGCGGaG- -5'
14006 3' -57.3 NC_003521.1 + 162633 0.71 0.720663
Target:  5'- cGCGcccGCUCCGcACGC-CGUUUCGCCa- -3'
miRNA:   3'- uCGC---UGAGGC-UGUGaGCAGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 151330 0.69 0.810046
Target:  5'- gGGUGGCgUCCGagggccuGCGCUUcUUUCGCCUCa -3'
miRNA:   3'- -UCGCUG-AGGC-------UGUGAGcAGAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 146823 0.73 0.594033
Target:  5'- gAGCG-CUCCGccugucugggggGCGcCUCGUcCUCGCCUCc -3'
miRNA:   3'- -UCGCuGAGGC------------UGU-GAGCA-GAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 145279 0.68 0.85838
Target:  5'- cGGCGGCcagCUcGCGCgccggCGUCUCGCCg- -3'
miRNA:   3'- -UCGCUGa--GGcUGUGa----GCAGAGCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.