Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14006 | 3' | -57.3 | NC_003521.1 | + | 76873 | 0.68 | 0.843238 |
Target: 5'- cGGCGuccGCggCCGAgACUCcucCUCGCCUCu -3' miRNA: 3'- -UCGC---UGa-GGCUgUGAGca-GAGCGGAG- -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 131464 | 0.68 | 0.843238 |
Target: 5'- cGCG-CUCuCGGC-CUCGUCg-GCCUCc -3' miRNA: 3'- uCGCuGAG-GCUGuGAGCAGagCGGAG- -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 196461 | 0.68 | 0.843238 |
Target: 5'- cGCGAacCUCCGcugGCACUCGgcccgUUCcGCCUCc -3' miRNA: 3'- uCGCU--GAGGC---UGUGAGCa----GAG-CGGAG- -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 125348 | 0.69 | 0.835398 |
Target: 5'- cGCGGCccacgcuguucgUCCG-CGCUCGUCgcaguccgCGCUUCa -3' miRNA: 3'- uCGCUG------------AGGCuGUGAGCAGa-------GCGGAG- -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 88436 | 0.69 | 0.827389 |
Target: 5'- cGCGuCUCCaggGAgACgUCGUC-CGCCUCg -3' miRNA: 3'- uCGCuGAGG---CUgUG-AGCAGaGCGGAG- -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 64534 | 0.69 | 0.827389 |
Target: 5'- cGCGACgacgCCGACGCcCGUCUgcUGCUgcUCa -3' miRNA: 3'- uCGCUGa---GGCUGUGaGCAGA--GCGG--AG- -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 221709 | 0.69 | 0.827389 |
Target: 5'- cGGCGGC-CCGcCACccgcgUCGUCUC-CCUCc -3' miRNA: 3'- -UCGCUGaGGCuGUG-----AGCAGAGcGGAG- -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 34213 | 0.69 | 0.827389 |
Target: 5'- gGGCGGCguagaCGGCGCcCGUgUCGCCg- -3' miRNA: 3'- -UCGCUGag---GCUGUGaGCAgAGCGGag -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 233426 | 0.69 | 0.827389 |
Target: 5'- cGGUGGCUCCGACGgcCUCGacgcggucccuUCUgGCCa- -3' miRNA: 3'- -UCGCUGAGGCUGU--GAGC-----------AGAgCGGag -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 27773 | 0.69 | 0.822505 |
Target: 5'- gAGCGcggaggaagaaaccuACUCCGGCccGCUCGgccggCUCGCC-Cg -3' miRNA: 3'- -UCGC---------------UGAGGCUG--UGAGCa----GAGCGGaG- -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 138159 | 0.69 | 0.819217 |
Target: 5'- cGGCGGCUUCGcCGuCUCcUCgCGCCUCu -3' miRNA: 3'- -UCGCUGAGGCuGU-GAGcAGaGCGGAG- -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 138037 | 0.69 | 0.819217 |
Target: 5'- uGGCGGCcgCCGGCGC-CGUCaUCGCg-- -3' miRNA: 3'- -UCGCUGa-GGCUGUGaGCAG-AGCGgag -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 127282 | 0.69 | 0.810887 |
Target: 5'- cGCGGCacgUCCGACACgcCGUgguggcgCGCCUCg -3' miRNA: 3'- uCGCUG---AGGCUGUGa-GCAga-----GCGGAG- -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 151330 | 0.69 | 0.810046 |
Target: 5'- gGGUGGCgUCCGagggccuGCGCUUcUUUCGCCUCa -3' miRNA: 3'- -UCGCUG-AGGC-------UGUGAGcAGAGCGGAG- -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 36818 | 0.69 | 0.803264 |
Target: 5'- cGGCgGACUCgGGCaugaGCUCGUCguccaugucguccuaCGCCUCg -3' miRNA: 3'- -UCG-CUGAGgCUG----UGAGCAGa--------------GCGGAG- -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 121366 | 0.69 | 0.802409 |
Target: 5'- cGCGGCUUC-ACACU-GUCgCGCCUCc -3' miRNA: 3'- uCGCUGAGGcUGUGAgCAGaGCGGAG- -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 140567 | 0.7 | 0.785035 |
Target: 5'- cGGCGGCggCGACAgCUCGUCgUCGggcaCCUCg -3' miRNA: 3'- -UCGCUGagGCUGU-GAGCAG-AGC----GGAG- -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 26920 | 0.7 | 0.776154 |
Target: 5'- cGCG-CUCCaGACACgcucgCGaCUCGCCUUc -3' miRNA: 3'- uCGCuGAGG-CUGUGa----GCaGAGCGGAG- -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 74202 | 0.71 | 0.730134 |
Target: 5'- cGCGGC-CCGACGC-CGUCUucUGCCa- -3' miRNA: 3'- uCGCUGaGGCUGUGaGCAGA--GCGGag -5' |
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14006 | 3' | -57.3 | NC_003521.1 | + | 69975 | 0.71 | 0.730134 |
Target: 5'- cGCGGagaagCCGACGCgCGUCUCGUCg- -3' miRNA: 3'- uCGCUga---GGCUGUGaGCAGAGCGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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