miRNA display CGI


Results 21 - 40 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 3' -51.5 NC_003521.1 + 140546 0.74 0.836875
Target:  5'- cAAAGGcGGUGGCugcuGCGGCGGCgGCGGCg -3'
miRNA:   3'- cUUUCC-CUAUUG----CGCUGUCGgCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 236143 0.74 0.845092
Target:  5'- cGggGGGGAccGCGCGAC-GUCGcCGGCg -3'
miRNA:   3'- -CuuUCCCUauUGCGCUGuCGGC-GUUG- -5'
14009 3' -51.5 NC_003521.1 + 57697 0.73 0.853111
Target:  5'- --cGGGGA---UGCGACcGCCGCAACc -3'
miRNA:   3'- cuuUCCCUauuGCGCUGuCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 31292 0.73 0.853111
Target:  5'- ---cGGGcgcAUAAcCGCGGCAGCgGCGACg -3'
miRNA:   3'- cuuuCCC---UAUU-GCGCUGUCGgCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 98463 0.73 0.860926
Target:  5'- uGGAGGa--GGCgGCGGCGGCCGCGGCg -3'
miRNA:   3'- cUUUCCcuaUUG-CGCUGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 196073 0.73 0.860926
Target:  5'- cGAGGuGGAcUGGCGCGAgAGCUGCAGa -3'
miRNA:   3'- cUUUC-CCU-AUUGCGCUgUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 43472 0.73 0.875918
Target:  5'- ---cGGGccAGCGCGGCGGCCGUg-- -3'
miRNA:   3'- cuuuCCCuaUUGCGCUGUCGGCGuug -5'
14009 3' -51.5 NC_003521.1 + 71874 0.73 0.875918
Target:  5'- ---cGGGAgcGACgGCGACAGCgGCGGCc -3'
miRNA:   3'- cuuuCCCUa-UUG-CGCUGUCGgCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 112343 0.73 0.882377
Target:  5'- --cGGGGugauugccacaccGUAcgcACGCGGCGGCUGCGGCg -3'
miRNA:   3'- cuuUCCC-------------UAU---UGCGCUGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 168359 0.73 0.883083
Target:  5'- gGAGAGGGGagguucgaggUAGa-CGACAGUCGCGACg -3'
miRNA:   3'- -CUUUCCCU----------AUUgcGCUGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 103648 0.73 0.883083
Target:  5'- --cGGGGGcAGCucgGCGGCGGCCGCuGCg -3'
miRNA:   3'- cuuUCCCUaUUG---CGCUGUCGGCGuUG- -5'
14009 3' -51.5 NC_003521.1 + 22173 0.73 0.883083
Target:  5'- gGAGAGGGAcGAgGCGccgcCGGCCGUGGCc -3'
miRNA:   3'- -CUUUCCCUaUUgCGCu---GUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 109696 0.73 0.883083
Target:  5'- -cGAGGGGUcGCGCugucccuucccGGCAGCCGCGc- -3'
miRNA:   3'- cuUUCCCUAuUGCG-----------CUGUCGGCGUug -5'
14009 3' -51.5 NC_003521.1 + 77685 0.73 0.889338
Target:  5'- --cGGGGGgcACGCuggcgaaGACAGCCGUGGCg -3'
miRNA:   3'- cuuUCCCUauUGCG-------CUGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 98624 0.73 0.890021
Target:  5'- aGGAGGGcGAgAGCgGCGGCGGCgGUAGCg -3'
miRNA:   3'- -CUUUCC-CUaUUG-CGCUGUCGgCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 76318 0.73 0.890021
Target:  5'- ---cGGaGGUGGCgGCGACAGCUGCGGa -3'
miRNA:   3'- cuuuCC-CUAUUG-CGCUGUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 10503 0.73 0.890021
Target:  5'- --cGGGGAUGGCGUGGCcccccaGGCggCGCGACa -3'
miRNA:   3'- cuuUCCCUAUUGCGCUG------UCG--GCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 205005 0.72 0.896068
Target:  5'- ---cGGGAgacccgcUAACGaCGGCGuGCCGCGACg -3'
miRNA:   3'- cuuuCCCU-------AUUGC-GCUGU-CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 150563 0.72 0.896728
Target:  5'- ---cGGGugGugGCGGCGGCgGCGGCg -3'
miRNA:   3'- cuuuCCCuaUugCGCUGUCGgCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 53407 0.72 0.896728
Target:  5'- -cAGGGGAUGGCGCGuCGGCagGuCGGCa -3'
miRNA:   3'- cuUUCCCUAUUGCGCuGUCGg-C-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.