miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 5' -60.7 NC_003521.1 + 209218 0.7 0.59636
Target:  5'- uCCGCCACcugaCGGUGGACgaCAuCUCCCGu -3'
miRNA:   3'- -GGCGGUGc---GCUACCUGggGU-GAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 27767 0.7 0.605864
Target:  5'- uCCGCCgaGCGCGGaGGAagaaaCCUACUCCg- -3'
miRNA:   3'- -GGCGG--UGCGCUaCCUg----GGGUGAGGgu -5'
14009 5' -60.7 NC_003521.1 + 114333 0.7 0.60967
Target:  5'- gCCGCCugGCGcucuucgucgaagacGUGGGuCUCUACUCCa- -3'
miRNA:   3'- -GGCGGugCGC---------------UACCU-GGGGUGAGGgu -5'
14009 5' -60.7 NC_003521.1 + 17418 0.7 0.615384
Target:  5'- aCGCCGCGCcg-GGGCgCCACacggCCCGc -3'
miRNA:   3'- gGCGGUGCGcuaCCUGgGGUGa---GGGU- -5'
14009 5' -60.7 NC_003521.1 + 90518 0.7 0.623962
Target:  5'- uCCGUCGuagagguagaacuCGCGAUGG-CCCCGCgacagcaCCCAc -3'
miRNA:   3'- -GGCGGU-------------GCGCUACCuGGGGUGa------GGGU- -5'
14009 5' -60.7 NC_003521.1 + 149503 0.7 0.643987
Target:  5'- gCCGCUGCGCGAcuaccugGGACCCgAC-CUCu -3'
miRNA:   3'- -GGCGGUGCGCUa------CCUGGGgUGaGGGu -5'
14009 5' -60.7 NC_003521.1 + 161509 0.69 0.653513
Target:  5'- -gGUCGCGUGGUGGGgCCCAUUCgCu -3'
miRNA:   3'- ggCGGUGCGCUACCUgGGGUGAGgGu -5'
14009 5' -60.7 NC_003521.1 + 108420 0.69 0.653513
Target:  5'- uUGCCAuUGCag-GGACCCCGC-CCCGu -3'
miRNA:   3'- gGCGGU-GCGcuaCCUGGGGUGaGGGU- -5'
14009 5' -60.7 NC_003521.1 + 67566 0.69 0.653513
Target:  5'- gUGUCAgGCGgcGGGCCCCGCgggCCAg -3'
miRNA:   3'- gGCGGUgCGCuaCCUGGGGUGag-GGU- -5'
14009 5' -60.7 NC_003521.1 + 8442 0.69 0.663025
Target:  5'- -aGCCAgCGCGAgacggUGGACCuCCGCUUCgCGg -3'
miRNA:   3'- ggCGGU-GCGCU-----ACCUGG-GGUGAGG-GU- -5'
14009 5' -60.7 NC_003521.1 + 238952 0.69 0.663025
Target:  5'- gCGCCAgcUGCGGUauuagaggcgccGGGCCCCG-UCCCGg -3'
miRNA:   3'- gGCGGU--GCGCUA------------CCUGGGGUgAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 38725 0.69 0.663025
Target:  5'- gCGCCAgcUGCGGUauuagaggcgccGGGCCCCG-UCCCGg -3'
miRNA:   3'- gGCGGU--GCGCUA------------CCUGGGGUgAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 27205 0.69 0.672515
Target:  5'- cCUGCUGCGCGGc-GACCgCCAC-CCCAa -3'
miRNA:   3'- -GGCGGUGCGCUacCUGG-GGUGaGGGU- -5'
14009 5' -60.7 NC_003521.1 + 44354 0.69 0.672515
Target:  5'- uCCGCgACGCGcugGGGCugcggCCCACgCCCGa -3'
miRNA:   3'- -GGCGgUGCGCua-CCUG-----GGGUGaGGGU- -5'
14009 5' -60.7 NC_003521.1 + 232848 0.69 0.672515
Target:  5'- cCCGCCGC-CGc-GGACCCC--UCCCGg -3'
miRNA:   3'- -GGCGGUGcGCuaCCUGGGGugAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 112647 0.69 0.672515
Target:  5'- gUGCCACcCGGUGcugcacGACCCCACgCCCu -3'
miRNA:   3'- gGCGGUGcGCUAC------CUGGGGUGaGGGu -5'
14009 5' -60.7 NC_003521.1 + 135517 0.69 0.672515
Target:  5'- aCGUCGCGCGgcGu-CCCCACgCCCGc -3'
miRNA:   3'- gGCGGUGCGCuaCcuGGGGUGaGGGU- -5'
14009 5' -60.7 NC_003521.1 + 137261 0.69 0.672515
Target:  5'- uCUGCgCGgGCGAccUGGGCCCCGucaUCCCc -3'
miRNA:   3'- -GGCG-GUgCGCU--ACCUGGGGUg--AGGGu -5'
14009 5' -60.7 NC_003521.1 + 128066 0.69 0.681976
Target:  5'- gCGCCGCGCGAUGccGCCCauggGCUCgCGc -3'
miRNA:   3'- gGCGGUGCGCUACc-UGGGg---UGAGgGU- -5'
14009 5' -60.7 NC_003521.1 + 93427 0.69 0.681976
Target:  5'- aCCGCCACGCGAUccGCCaucucgCACcCCCGu -3'
miRNA:   3'- -GGCGGUGCGCUAccUGGg-----GUGaGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.