miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14021 5' -62.5 NC_003521.1 + 180103 1.13 0.000748
Target:  5'- aGGGAGGGCAGCGGCGUGGUGCGACCCg -3'
miRNA:   3'- -CCCUCCCGUCGCCGCACCACGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 73139 0.81 0.121324
Target:  5'- cGGcGGGGGCAGCGGCGgcGGcgccgccucggccUGCGACCUg -3'
miRNA:   3'- -CC-CUCCCGUCGCCGCa-CC-------------ACGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 155256 0.79 0.169459
Target:  5'- uGGGGGGCGGCGGCGgcGGcGCcucaGGCCCg -3'
miRNA:   3'- cCCUCCCGUCGCCGCa-CCaCG----CUGGG- -5'
14021 5' -62.5 NC_003521.1 + 167045 0.79 0.175077
Target:  5'- ---cGGGCAGCGGCGUggcgcucaugacgccGGUGCcGGCCCa -3'
miRNA:   3'- cccuCCCGUCGCCGCA---------------CCACG-CUGGG- -5'
14021 5' -62.5 NC_003521.1 + 150453 0.78 0.18128
Target:  5'- cGGGguccuccuggucuGGGGCGGCGaGCGccUGGUGgGGCCCu -3'
miRNA:   3'- -CCC-------------UCCCGUCGC-CGC--ACCACgCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 98217 0.78 0.194718
Target:  5'- cGGcGGGCAGCGGCGUGGgagGCGGg-- -3'
miRNA:   3'- cCCuCCCGUCGCCGCACCa--CGCUggg -5'
14021 5' -62.5 NC_003521.1 + 204727 0.78 0.199235
Target:  5'- gGGGAGGGUGGCGaGgGUGGUGauggaGGCgCCg -3'
miRNA:   3'- -CCCUCCCGUCGC-CgCACCACg----CUG-GG- -5'
14021 5' -62.5 NC_003521.1 + 91873 0.77 0.213338
Target:  5'- aGGAcGGCGGCGGC--GGUGCGACCa -3'
miRNA:   3'- cCCUcCCGUCGCCGcaCCACGCUGGg -5'
14021 5' -62.5 NC_003521.1 + 102747 0.77 0.220208
Target:  5'- uGGGAGGGcCAgcgccucagcuguccGCGGCGgucgcGG-GCGACCCa -3'
miRNA:   3'- -CCCUCCC-GU---------------CGCCGCa----CCaCGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 165749 0.77 0.223209
Target:  5'- aGGGAGGGCGGCGGCGgcuUGCccaucaucGugCCg -3'
miRNA:   3'- -CCCUCCCGUCGCCGCaccACG--------CugGG- -5'
14021 5' -62.5 NC_003521.1 + 213120 0.76 0.238742
Target:  5'- -cGcuGGguGUGGCGUGGUGCGGCCg -3'
miRNA:   3'- ccCucCCguCGCCGCACCACGCUGGg -5'
14021 5' -62.5 NC_003521.1 + 91920 0.76 0.238742
Target:  5'- aGGAcGGCGGCGGCGaugcGGUG-GACCCg -3'
miRNA:   3'- cCCUcCCGUCGCCGCa---CCACgCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 36722 0.76 0.238742
Target:  5'- uGGAGGcGCAGUGGCGccaccaGGUGCacguGGCCCa -3'
miRNA:   3'- cCCUCC-CGUCGCCGCa-----CCACG----CUGGG- -5'
14021 5' -62.5 NC_003521.1 + 175056 0.76 0.255169
Target:  5'- ----cGGCGGCGGUGUGaUGCGGCCCg -3'
miRNA:   3'- cccucCCGUCGCCGCACcACGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 98466 0.75 0.272511
Target:  5'- aGGAGGcggcggcggccGCGGCGGcCGUGGcgGCGGCCUc -3'
miRNA:   3'- cCCUCC-----------CGUCGCC-GCACCa-CGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 7732 0.74 0.310008
Target:  5'- gGGGAGGGCggcgcgAGCGGCGgaGGcgGCGGcaguCCCa -3'
miRNA:   3'- -CCCUCCCG------UCGCCGCa-CCa-CGCU----GGG- -5'
14021 5' -62.5 NC_003521.1 + 150563 0.74 0.310008
Target:  5'- cGGGuGGuGGCGGCGGCGgcGGcGCGGCUCc -3'
miRNA:   3'- -CCC-UC-CCGUCGCCGCa-CCaCGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 128466 0.74 0.323352
Target:  5'- cGGAucacguccauGGGCAGCGGCGUGaggcuGUGCGcGCCg -3'
miRNA:   3'- cCCU----------CCCGUCGCCGCAC-----CACGC-UGGg -5'
14021 5' -62.5 NC_003521.1 + 109868 0.74 0.335027
Target:  5'- -uGAcGGGCGGCGGCGgggccaccaguaacUGcGUGCGACCUc -3'
miRNA:   3'- ccCU-CCCGUCGCCGC--------------AC-CACGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 135800 0.74 0.337119
Target:  5'- aGGAGGaGCAGCGGCGgagGGaggcgcgGCGACg- -3'
miRNA:   3'- cCCUCC-CGUCGCCGCa--CCa------CGCUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.