miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14021 5' -62.5 NC_003521.1 + 226881 0.71 0.496754
Target:  5'- -cGAGGGCAGCuGCGgGGgcaccacgGCGGCCa -3'
miRNA:   3'- ccCUCCCGUCGcCGCaCCa-------CGCUGGg -5'
14021 5' -62.5 NC_003521.1 + 220501 0.72 0.420247
Target:  5'- cGGGAGaGCAGCaGCGUGGUG--GCCUc -3'
miRNA:   3'- -CCCUCcCGUCGcCGCACCACgcUGGG- -5'
14021 5' -62.5 NC_003521.1 + 118929 0.72 0.427579
Target:  5'- cGGcGuGGGCGGCGGCGUcccgucaGGgccaGCG-CCCg -3'
miRNA:   3'- -CC-CuCCCGUCGCCGCA-------CCa---CGCuGGG- -5'
14021 5' -62.5 NC_003521.1 + 92013 0.72 0.436643
Target:  5'- cGGcGAGGcGCGGCGGCGgcggcGGUGgGuCCg -3'
miRNA:   3'- -CC-CUCC-CGUCGCCGCa----CCACgCuGGg -5'
14021 5' -62.5 NC_003521.1 + 82824 0.72 0.444978
Target:  5'- aGGAGGGCaccGGCGGCacagGUGGagGUG-CCCa -3'
miRNA:   3'- cCCUCCCG---UCGCCG----CACCa-CGCuGGG- -5'
14021 5' -62.5 NC_003521.1 + 49092 0.71 0.461911
Target:  5'- cGGGGGGCgauauccacaaAGUGcGCGUGGUgaccGCGGCgCCg -3'
miRNA:   3'- cCCUCCCG-----------UCGC-CGCACCA----CGCUG-GG- -5'
14021 5' -62.5 NC_003521.1 + 131046 0.71 0.473964
Target:  5'- uGGGc-GGCGGCGGCGggccucuggacgcggUGGcgGCGACCg -3'
miRNA:   3'- -CCCucCCGUCGCCGC---------------ACCa-CGCUGGg -5'
14021 5' -62.5 NC_003521.1 + 72538 0.71 0.487929
Target:  5'- cGGA-GGCGGCGGCGacGGUgucgucgucucGCGACCUc -3'
miRNA:   3'- cCCUcCCGUCGCCGCa-CCA-----------CGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 148962 0.71 0.487929
Target:  5'- uGGAGGGCAGCGccaucauccGCGUGcugGCGcgcaccuucacGCCCg -3'
miRNA:   3'- cCCUCCCGUCGC---------CGCACca-CGC-----------UGGG- -5'
14021 5' -62.5 NC_003521.1 + 212857 0.72 0.404229
Target:  5'- uGGGGGGCAGCGGUauggucgucgucGUGGacgcggGCGACg- -3'
miRNA:   3'- cCCUCCCGUCGCCG------------CACCa-----CGCUGgg -5'
14021 5' -62.5 NC_003521.1 + 24233 0.73 0.376388
Target:  5'- cGGGuuGGGCAGCgGGCGgucGGgcgguauaucggcgGCGACCUg -3'
miRNA:   3'- -CCCu-CCCGUCG-CCGCa--CCa-------------CGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 61841 0.73 0.373375
Target:  5'- uGGGAGGGCGccgcggaaccGCGGCGccUGuccaUGCGACCa -3'
miRNA:   3'- -CCCUCCCGU----------CGCCGC--ACc---ACGCUGGg -5'
14021 5' -62.5 NC_003521.1 + 150453 0.78 0.18128
Target:  5'- cGGGguccuccuggucuGGGGCGGCGaGCGccUGGUGgGGCCCu -3'
miRNA:   3'- -CCC-------------UCCCGUCGC-CGC--ACCACgCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 91873 0.77 0.213338
Target:  5'- aGGAcGGCGGCGGC--GGUGCGACCa -3'
miRNA:   3'- cCCUcCCGUCGCCGcaCCACGCUGGg -5'
14021 5' -62.5 NC_003521.1 + 165749 0.77 0.223209
Target:  5'- aGGGAGGGCGGCGGCGgcuUGCccaucaucGugCCg -3'
miRNA:   3'- -CCCUCCCGUCGCCGCaccACG--------CugGG- -5'
14021 5' -62.5 NC_003521.1 + 91920 0.76 0.238742
Target:  5'- aGGAcGGCGGCGGCGaugcGGUG-GACCCg -3'
miRNA:   3'- cCCUcCCGUCGCCGCa---CCACgCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 213120 0.76 0.238742
Target:  5'- -cGcuGGguGUGGCGUGGUGCGGCCg -3'
miRNA:   3'- ccCucCCguCGCCGCACCACGCUGGg -5'
14021 5' -62.5 NC_003521.1 + 150563 0.74 0.310008
Target:  5'- cGGGuGGuGGCGGCGGCGgcGGcGCGGCUCc -3'
miRNA:   3'- -CCC-UC-CCGUCGCCGCa-CCaCGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 128466 0.74 0.323352
Target:  5'- cGGAucacguccauGGGCAGCGGCGUGaggcuGUGCGcGCCg -3'
miRNA:   3'- cCCU----------CCCGUCGCCGCAC-----CACGC-UGGg -5'
14021 5' -62.5 NC_003521.1 + 135800 0.74 0.337119
Target:  5'- aGGAGGaGCAGCGGCGgagGGaggcgcgGCGACg- -3'
miRNA:   3'- cCCUCC-CGUCGCCGCa--CCa------CGCUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.