miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14021 5' -62.5 NC_003521.1 + 58 0.66 0.781409
Target:  5'- cGGAaccGGuuuccGCGGCGGCGUGcG-GCGGgCCg -3'
miRNA:   3'- cCCU---CC-----CGUCGCCGCAC-CaCGCUgGG- -5'
14021 5' -62.5 NC_003521.1 + 348 0.69 0.578923
Target:  5'- aGGAGGGCaaacgaugugGGCGGCGUGcUGUGGaaCg -3'
miRNA:   3'- cCCUCCCG----------UCGCCGCACcACGCUggG- -5'
14021 5' -62.5 NC_003521.1 + 5155 0.71 0.500304
Target:  5'- cGGGGGGuucauagauacgaaaGgGGCGGCGagGGUGC-ACCCc -3'
miRNA:   3'- -CCCUCC---------------CgUCGCCGCa-CCACGcUGGG- -5'
14021 5' -62.5 NC_003521.1 + 6835 0.67 0.688883
Target:  5'- aGGAGGGCgccgaggagguuguAGUgggaGGCGUGGguaGCgGAUCCg -3'
miRNA:   3'- cCCUCCCG--------------UCG----CCGCACCa--CG-CUGGG- -5'
14021 5' -62.5 NC_003521.1 + 7732 0.74 0.310008
Target:  5'- gGGGAGGGCggcgcgAGCGGCGgaGGcgGCGGcaguCCCa -3'
miRNA:   3'- -CCCUCCCG------UCGCCGCa-CCa-CGCU----GGG- -5'
14021 5' -62.5 NC_003521.1 + 7978 0.69 0.5696
Target:  5'- cGGGAGGGUccgcGGCGGCGgGGgagGU-ACCg -3'
miRNA:   3'- -CCCUCCCG----UCGCCGCaCCa--CGcUGGg -5'
14021 5' -62.5 NC_003521.1 + 15520 0.69 0.61083
Target:  5'- cGGGuuGGCGGCGGCauGUGGcgaacGCGcugggaagagggggcGCCCa -3'
miRNA:   3'- -CCCucCCGUCGCCG--CACCa----CGC---------------UGGG- -5'
14021 5' -62.5 NC_003521.1 + 16995 0.68 0.620254
Target:  5'- aGGGAcagcaggcgcccgcgGuGGCGGCGGCGcaGGcccgucgucugGCGGCCCa -3'
miRNA:   3'- -CCCU---------------C-CCGUCGCCGCa-CCa----------CGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 17789 0.68 0.644778
Target:  5'- uGGAGGcCGuCGGCGUGcuggccGUGCGACCg -3'
miRNA:   3'- cCCUCCcGUcGCCGCAC------CACGCUGGg -5'
14021 5' -62.5 NC_003521.1 + 18790 0.68 0.644778
Target:  5'- uGGAGGGcCAGCGcugcuuucGCGUGGccaagUGCuuCCCg -3'
miRNA:   3'- cCCUCCC-GUCGC--------CGCACC-----ACGcuGGG- -5'
14021 5' -62.5 NC_003521.1 + 19452 0.72 0.431686
Target:  5'- gGGGAGGcGCGGCGggaccaugucgcugcGCGgccaGGUGCagguGGCCCg -3'
miRNA:   3'- -CCCUCC-CGUCGC---------------CGCa---CCACG----CUGGG- -5'
14021 5' -62.5 NC_003521.1 + 22354 0.66 0.764143
Target:  5'- --cGGGGCcacuGCgcccacGGCGUGGUGcCGGCCa -3'
miRNA:   3'- cccUCCCGu---CG------CCGCACCAC-GCUGGg -5'
14021 5' -62.5 NC_003521.1 + 24233 0.73 0.376388
Target:  5'- cGGGuuGGGCAGCgGGCGgucGGgcgguauaucggcgGCGACCUg -3'
miRNA:   3'- -CCCu-CCCGUCG-CCGCa--CCa-------------CGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 27512 0.68 0.672995
Target:  5'- cGGGGGGCGuGCGGCccgagGCG-CCCa -3'
miRNA:   3'- cCCUCCCGU-CGCCGcaccaCGCuGGG- -5'
14021 5' -62.5 NC_003521.1 + 31292 0.69 0.607064
Target:  5'- cGGGcGcauaaccgcGGCAGCGGCGacGGUcaccGUGACCCc -3'
miRNA:   3'- -CCCuC---------CCGUCGCCGCa-CCA----CGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 32195 0.66 0.755358
Target:  5'- cGGGucGGGCauGGUGGgGaUGGcucgcaacGCGGCCCa -3'
miRNA:   3'- -CCCu-CCCG--UCGCCgC-ACCa-------CGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 34411 0.69 0.560315
Target:  5'- aGGuGAGGauCAGCugGGCGUcgcGGUGCGACuCCa -3'
miRNA:   3'- -CC-CUCCc-GUCG--CCGCA---CCACGCUG-GG- -5'
14021 5' -62.5 NC_003521.1 + 36337 0.69 0.577989
Target:  5'- gGGGAcaugcgacuuuagGGGCucgGGCuGGCGUGGcGCGGCUUc -3'
miRNA:   3'- -CCCU-------------CCCG---UCG-CCGCACCaCGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 36722 0.76 0.238742
Target:  5'- uGGAGGcGCAGUGGCGccaccaGGUGCacguGGCCCa -3'
miRNA:   3'- cCCUCC-CGUCGCCGCa-----CCACG----CUGGG- -5'
14021 5' -62.5 NC_003521.1 + 37538 0.71 0.453402
Target:  5'- gGGGuGGGCAGCGG-G-GGUcGCGGCg- -3'
miRNA:   3'- -CCCuCCCGUCGCCgCaCCA-CGCUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.