miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14021 5' -62.5 NC_003521.1 + 240607 0.66 0.781409
Target:  5'- cGGAaccGGuuuccGCGGCGGCGUGcG-GCGGgCCg -3'
miRNA:   3'- cCCU---CC-----CGUCGCCGCAC-CaCGCUgGG- -5'
14021 5' -62.5 NC_003521.1 + 239451 0.66 0.755358
Target:  5'- cGGGcucGGGGaCAGCGGUGgcccgcGGcGCGuucaGCCCc -3'
miRNA:   3'- -CCC---UCCC-GUCGCCGCa-----CCaCGC----UGGG- -5'
14021 5' -62.5 NC_003521.1 + 238444 0.71 0.496754
Target:  5'- cGGGcaggaggcgcAGGGCGGCcucGGCGggcgGGgcggagacGCGGCCCa -3'
miRNA:   3'- -CCC----------UCCCGUCG---CCGCa---CCa-------CGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 226881 0.71 0.496754
Target:  5'- -cGAGGGCAGCuGCGgGGgcaccacgGCGGCCa -3'
miRNA:   3'- ccCUCCCGUCGcCGCaCCa-------CGCUGGg -5'
14021 5' -62.5 NC_003521.1 + 221998 0.66 0.755358
Target:  5'- --uAGGGCAuguGCGGCGUGG-GCGggaagcacuugGCCa -3'
miRNA:   3'- cccUCCCGU---CGCCGCACCaCGC-----------UGGg -5'
14021 5' -62.5 NC_003521.1 + 220501 0.72 0.420247
Target:  5'- cGGGAGaGCAGCaGCGUGGUG--GCCUc -3'
miRNA:   3'- -CCCUCcCGUCGcCGCACCACgcUGGG- -5'
14021 5' -62.5 NC_003521.1 + 218689 0.67 0.704656
Target:  5'- -aGAGGGCGGCGGCGaaggcggaggagacGGcgGCGGCg- -3'
miRNA:   3'- ccCUCCCGUCGCCGCa-------------CCa-CGCUGgg -5'
14021 5' -62.5 NC_003521.1 + 218224 0.67 0.719364
Target:  5'- cGGAGGucaggcgaccGCAGgGGCcgucacgGGUGCGACgCg -3'
miRNA:   3'- cCCUCC----------CGUCgCCGca-----CCACGCUGgG- -5'
14021 5' -62.5 NC_003521.1 + 216908 0.7 0.505651
Target:  5'- aGGAGGGC-GCGGUGgcagcggaggcGGU-CGACCCc -3'
miRNA:   3'- cCCUCCCGuCGCCGCa----------CCAcGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 214970 0.7 0.532732
Target:  5'- aGGAagacuuuGGCGGCGGCcaggggGGUGCGAgCCa -3'
miRNA:   3'- cCCUc------CCGUCGCCGca----CCACGCUgGG- -5'
14021 5' -62.5 NC_003521.1 + 213120 0.76 0.238742
Target:  5'- -cGcuGGguGUGGCGUGGUGCGGCCg -3'
miRNA:   3'- ccCucCCguCGCCGCACCACGCUGGg -5'
14021 5' -62.5 NC_003521.1 + 212857 0.72 0.404229
Target:  5'- uGGGGGGCAGCGGUauggucgucgucGUGGacgcggGCGACg- -3'
miRNA:   3'- cCCUCCCGUCGCCG------------CACCa-----CGCUGgg -5'
14021 5' -62.5 NC_003521.1 + 212612 0.72 0.428399
Target:  5'- gGGGAagcuGGGCGGUugcgauaccuugGGCGacuUGGccaUGCGACCCg -3'
miRNA:   3'- -CCCU----CCCGUCG------------CCGC---ACC---ACGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 212048 0.66 0.738417
Target:  5'- cGGAGcGCAGaaagugcagcgcuagGGCgGUGGcGCGGCCCg -3'
miRNA:   3'- cCCUCcCGUCg--------------CCG-CACCaCGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 210411 0.68 0.654201
Target:  5'- uGGGAccGCAGCguggucGGCGUGGgcgGCGACg- -3'
miRNA:   3'- -CCCUccCGUCG------CCGCACCa--CGCUGgg -5'
14021 5' -62.5 NC_003521.1 + 209555 0.68 0.654201
Target:  5'- cGGcGGGGUGGCGGCGacGGUGgCGGgggUCCg -3'
miRNA:   3'- -CCcUCCCGUCGCCGCa-CCAC-GCU---GGG- -5'
14021 5' -62.5 NC_003521.1 + 207438 0.7 0.514615
Target:  5'- aGGGAGaGCGGCGGC-UGGcgGCGugUg -3'
miRNA:   3'- -CCCUCcCGUCGCCGcACCa-CGCugGg -5'
14021 5' -62.5 NC_003521.1 + 204727 0.78 0.199235
Target:  5'- gGGGAGGGUGGCGaGgGUGGUGauggaGGCgCCg -3'
miRNA:   3'- -CCCUCCCGUCGC-CgCACCACg----CUG-GG- -5'
14021 5' -62.5 NC_003521.1 + 200286 0.66 0.781409
Target:  5'- cGGAaccGGuuuccGCGGCGGCGUGcG-GCGGgCCg -3'
miRNA:   3'- cCCU---CC-----CGUCGCCGCAC-CaCGCUgGG- -5'
14021 5' -62.5 NC_003521.1 + 199450 0.68 0.635346
Target:  5'- uGGAGcGGUacgacuGGCGcGCGUaGGUGCGACg- -3'
miRNA:   3'- cCCUC-CCG------UCGC-CGCA-CCACGCUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.