miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 3' -52.5 NC_003521.1 + 179876 1.13 0.005277
Target:  5'- gGCACAGCUGGAUGAGCGUCAUGAGACg -3'
miRNA:   3'- -CGUGUCGACCUACUCGCAGUACUCUG- -5'
14022 3' -52.5 NC_003521.1 + 162243 0.74 0.800479
Target:  5'- gGCGCuGGCgGGGUGGGCGUCAacgGGGGu -3'
miRNA:   3'- -CGUG-UCGaCCUACUCGCAGUa--CUCUg -5'
14022 3' -52.5 NC_003521.1 + 102462 0.73 0.843251
Target:  5'- gGCGCAGCaGGAUGAGCuggCAUaGGAUg -3'
miRNA:   3'- -CGUGUCGaCCUACUCGca-GUAcUCUG- -5'
14022 3' -52.5 NC_003521.1 + 98496 0.72 0.866664
Target:  5'- gGCAacgagGGCUGGGUGGuCGUCGUG-GACa -3'
miRNA:   3'- -CGUg----UCGACCUACUcGCAGUACuCUG- -5'
14022 3' -52.5 NC_003521.1 + 18572 0.72 0.888171
Target:  5'- cGCGCAGCUGGA-GAGCG-CGcucGACu -3'
miRNA:   3'- -CGUGUCGACCUaCUCGCaGUacuCUG- -5'
14022 3' -52.5 NC_003521.1 + 104831 0.71 0.901381
Target:  5'- aGUGCAGCUGGAucuccucggUGAagGCGUUGUG-GACg -3'
miRNA:   3'- -CGUGUCGACCU---------ACU--CGCAGUACuCUG- -5'
14022 3' -52.5 NC_003521.1 + 35216 0.71 0.901381
Target:  5'- cGCGCGGgUcGGAUcGAGCGUCcucGGGGCg -3'
miRNA:   3'- -CGUGUCgA-CCUA-CUCGCAGua-CUCUG- -5'
14022 3' -52.5 NC_003521.1 + 215267 0.71 0.901381
Target:  5'- -aACAGCUGGAaGGGCGagAUgcaGAGGCa -3'
miRNA:   3'- cgUGUCGACCUaCUCGCagUA---CUCUG- -5'
14022 3' -52.5 NC_003521.1 + 138719 0.71 0.907637
Target:  5'- gGCGCuGGCUGG-UGGuGCGUCcgGAGGg -3'
miRNA:   3'- -CGUG-UCGACCuACU-CGCAGuaCUCUg -5'
14022 3' -52.5 NC_003521.1 + 46377 0.71 0.919437
Target:  5'- aCGCGGCUGuGAgGGGCGcggggugCGUGGGGCg -3'
miRNA:   3'- cGUGUCGAC-CUaCUCGCa------GUACUCUG- -5'
14022 3' -52.5 NC_003521.1 + 126462 0.71 0.919437
Target:  5'- uGUACAGCaUGGAggccAGCGUCAUGAccGAg -3'
miRNA:   3'- -CGUGUCG-ACCUac--UCGCAGUACU--CUg -5'
14022 3' -52.5 NC_003521.1 + 177803 0.7 0.935339
Target:  5'- ----cGCUGG-UGGGCGUCGUG-GGCg -3'
miRNA:   3'- cguguCGACCuACUCGCAGUACuCUG- -5'
14022 3' -52.5 NC_003521.1 + 101421 0.7 0.94016
Target:  5'- cGUGCGGCUGGAaGAGCaGUaCGUuGGGCg -3'
miRNA:   3'- -CGUGUCGACCUaCUCG-CA-GUAcUCUG- -5'
14022 3' -52.5 NC_003521.1 + 91469 0.7 0.944742
Target:  5'- cGCGCAGCUcgcGGGUGuauGCGUgGguggGGGAUg -3'
miRNA:   3'- -CGUGUCGA---CCUACu--CGCAgUa---CUCUG- -5'
14022 3' -52.5 NC_003521.1 + 120398 0.69 0.953202
Target:  5'- gGCACAGa-GGAUGGGUG-CAaaGAGACa -3'
miRNA:   3'- -CGUGUCgaCCUACUCGCaGUa-CUCUG- -5'
14022 3' -52.5 NC_003521.1 + 166222 0.69 0.957085
Target:  5'- uGUACAGCUGGuagaaGAGCGUgAUGccgcccGGCg -3'
miRNA:   3'- -CGUGUCGACCua---CUCGCAgUACu-----CUG- -5'
14022 3' -52.5 NC_003521.1 + 40062 0.69 0.960743
Target:  5'- uGCACAGacuCUGGAUGcGCGUC---AGGCa -3'
miRNA:   3'- -CGUGUC---GACCUACuCGCAGuacUCUG- -5'
14022 3' -52.5 NC_003521.1 + 7808 0.68 0.967399
Target:  5'- aGCgGCAGCUGGAc-GGCGUCA--AGGCc -3'
miRNA:   3'- -CG-UGUCGACCUacUCGCAGUacUCUG- -5'
14022 3' -52.5 NC_003521.1 + 157041 0.68 0.967399
Target:  5'- gGCGCGGUcGGAgGAGCG-CGgcggGGGGCg -3'
miRNA:   3'- -CGUGUCGaCCUaCUCGCaGUa---CUCUG- -5'
14022 3' -52.5 NC_003521.1 + 168438 0.68 0.967399
Target:  5'- cCGCGGCggcgGGcgugaaGAGCGUgAUGGGGCg -3'
miRNA:   3'- cGUGUCGa---CCua----CUCGCAgUACUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.