miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 3' -52.5 NC_003521.1 + 7808 0.68 0.967399
Target:  5'- aGCgGCAGCUGGAc-GGCGUCA--AGGCc -3'
miRNA:   3'- -CG-UGUCGACCUacUCGCAGUacUCUG- -5'
14022 3' -52.5 NC_003521.1 + 17184 0.67 0.987729
Target:  5'- -gGCAGCUGGGcaGGCGcaUCGUG-GACg -3'
miRNA:   3'- cgUGUCGACCUacUCGC--AGUACuCUG- -5'
14022 3' -52.5 NC_003521.1 + 18572 0.72 0.888171
Target:  5'- cGCGCAGCUGGA-GAGCG-CGcucGACu -3'
miRNA:   3'- -CGUGUCGACCUaCUCGCaGUacuCUG- -5'
14022 3' -52.5 NC_003521.1 + 20646 0.67 0.987729
Target:  5'- cGCGC-GCUGG-UGGGCGccuaCGUGAuGACc -3'
miRNA:   3'- -CGUGuCGACCuACUCGCa---GUACU-CUG- -5'
14022 3' -52.5 NC_003521.1 + 25810 0.67 0.98615
Target:  5'- -gACGGCucUGGcgGuGCGUUAcGAGACg -3'
miRNA:   3'- cgUGUCG--ACCuaCuCGCAGUaCUCUG- -5'
14022 3' -52.5 NC_003521.1 + 27466 0.66 0.994496
Target:  5'- aGCGCcaGGCUGGccagGucCGUCAUGuGGCg -3'
miRNA:   3'- -CGUG--UCGACCua--CucGCAGUACuCUG- -5'
14022 3' -52.5 NC_003521.1 + 32427 0.67 0.986799
Target:  5'- cGCACGGCcuccugacgguuacGGAUGGGCGUCA-GAu-- -3'
miRNA:   3'- -CGUGUCGa-------------CCUACUCGCAGUaCUcug -5'
14022 3' -52.5 NC_003521.1 + 35216 0.71 0.901381
Target:  5'- cGCGCGGgUcGGAUcGAGCGUCcucGGGGCg -3'
miRNA:   3'- -CGUGUCgA-CCUA-CUCGCAGua-CUCUG- -5'
14022 3' -52.5 NC_003521.1 + 38142 0.66 0.994496
Target:  5'- aGCuuuacCGGCgUGGGUGGGUuUCA-GAGACg -3'
miRNA:   3'- -CGu----GUCG-ACCUACUCGcAGUaCUCUG- -5'
14022 3' -52.5 NC_003521.1 + 40062 0.69 0.960743
Target:  5'- uGCACAGacuCUGGAUGcGCGUC---AGGCa -3'
miRNA:   3'- -CGUGUC---GACCUACuCGCAGuacUCUG- -5'
14022 3' -52.5 NC_003521.1 + 46377 0.71 0.919437
Target:  5'- aCGCGGCUGuGAgGGGCGcggggugCGUGGGGCg -3'
miRNA:   3'- cGUGUCGAC-CUaCUCGCa------GUACUCUG- -5'
14022 3' -52.5 NC_003521.1 + 50030 0.66 0.990467
Target:  5'- aGCGCAGCaGGGccuuuuugaGGGCGUCGU-AGGCc -3'
miRNA:   3'- -CGUGUCGaCCUa--------CUCGCAGUAcUCUG- -5'
14022 3' -52.5 NC_003521.1 + 59171 0.67 0.989165
Target:  5'- gGCACGGCgccgcGGGCaGUCAgGAGACg -3'
miRNA:   3'- -CGUGUCGaccuaCUCG-CAGUaCUCUG- -5'
14022 3' -52.5 NC_003521.1 + 87662 0.68 0.978238
Target:  5'- gGCGCAGCccacgaugUGGuugcUGAGCGUg--GAGGCg -3'
miRNA:   3'- -CGUGUCG--------ACCu---ACUCGCAguaCUCUG- -5'
14022 3' -52.5 NC_003521.1 + 91469 0.7 0.944742
Target:  5'- cGCGCAGCUcgcGGGUGuauGCGUgGguggGGGAUg -3'
miRNA:   3'- -CGUGUCGA---CCUACu--CGCAgUa---CUCUG- -5'
14022 3' -52.5 NC_003521.1 + 98496 0.72 0.866664
Target:  5'- gGCAacgagGGCUGGGUGGuCGUCGUG-GACa -3'
miRNA:   3'- -CGUg----UCGACCUACUcGCAGUACuCUG- -5'
14022 3' -52.5 NC_003521.1 + 100128 0.68 0.970408
Target:  5'- cCGCGGCUGGcgGuccuGCGggaaggcCGUGGGGCu -3'
miRNA:   3'- cGUGUCGACCuaCu---CGCa------GUACUCUG- -5'
14022 3' -52.5 NC_003521.1 + 101421 0.7 0.94016
Target:  5'- cGUGCGGCUGGAaGAGCaGUaCGUuGGGCg -3'
miRNA:   3'- -CGUGUCGACCUaCUCG-CA-GUAcUCUG- -5'
14022 3' -52.5 NC_003521.1 + 102462 0.73 0.843251
Target:  5'- gGCGCAGCaGGAUGAGCuggCAUaGGAUg -3'
miRNA:   3'- -CGUGUCGaCCUACUCGca-GUAcUCUG- -5'
14022 3' -52.5 NC_003521.1 + 103403 0.67 0.984419
Target:  5'- uGCGC-GCUGG-UG-GCGUaCAUGAGGu -3'
miRNA:   3'- -CGUGuCGACCuACuCGCA-GUACUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.