Results 1 - 20 of 54 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 50030 | 0.66 | 0.990467 |
Target: 5'- aGCGCAGCaGGGccuuuuugaGGGCGUCGU-AGGCc -3' miRNA: 3'- -CGUGUCGaCCUa--------CUCGCAGUAcUCUG- -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 124483 | 0.66 | 0.990467 |
Target: 5'- cGgGCGGCUGGucguAGCG-CGUGAGGa -3' miRNA: 3'- -CgUGUCGACCuac-UCGCaGUACUCUg -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 139936 | 0.66 | 0.994576 |
Target: 5'- gGCACGGCcGGAaggccagcucguccaGGGCGcUCuUGAGGCg -3' miRNA: 3'- -CGUGUCGaCCUa--------------CUCGC-AGuACUCUG- -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 38142 | 0.66 | 0.994496 |
Target: 5'- aGCuuuacCGGCgUGGGUGGGUuUCA-GAGACg -3' miRNA: 3'- -CGu----GUCG-ACCUACUCGcAGUaCUCUG- -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 27466 | 0.66 | 0.994496 |
Target: 5'- aGCGCcaGGCUGGccagGucCGUCAUGuGGCg -3' miRNA: 3'- -CGUG--UCGACCua--CucGCAGUACuCUG- -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 116884 | 0.66 | 0.99365 |
Target: 5'- gGCGCGGCUGcGgcGGcGCGcCGgcggGAGACc -3' miRNA: 3'- -CGUGUCGAC-CuaCU-CGCaGUa---CUCUG- -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 119593 | 0.66 | 0.992701 |
Target: 5'- cGCugGGCggcGGGUGcAGCGUCucGUGcugcagguGGACg -3' miRNA: 3'- -CGugUCGa--CCUAC-UCGCAG--UAC--------UCUG- -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 106596 | 0.66 | 0.992701 |
Target: 5'- cGguCGGUgaGGAccgUGAGCaUCGUGGGACg -3' miRNA: 3'- -CguGUCGa-CCU---ACUCGcAGUACUCUG- -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 219274 | 0.66 | 0.992701 |
Target: 5'- cGCAgGgGCUGGcacAUGAGCGggccCAUGaAGGCc -3' miRNA: 3'- -CGUgU-CGACC---UACUCGCa---GUAC-UCUG- -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 141954 | 0.66 | 0.990467 |
Target: 5'- gGCGCccaccuGCUGGGcgacGAGCGUCAgGAGcuGCa -3' miRNA: 3'- -CGUGu-----CGACCUa---CUCGCAGUaCUC--UG- -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 130013 | 0.66 | 0.991643 |
Target: 5'- cGCGCAacggccGCUGGcuuucAGCGUCAUGgagGGGCa -3' miRNA: 3'- -CGUGU------CGACCuac--UCGCAGUAC---UCUG- -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 126868 | 0.66 | 0.990467 |
Target: 5'- uCGCGGCaGGccu-GCGUCAgUGAGACg -3' miRNA: 3'- cGUGUCGaCCuacuCGCAGU-ACUCUG- -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 108944 | 0.66 | 0.991643 |
Target: 5'- uGCGCGGCUGucGGUG-GCGUCuAUGAc-- -3' miRNA: 3'- -CGUGUCGAC--CUACuCGCAG-UACUcug -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 128182 | 0.66 | 0.992701 |
Target: 5'- cGUGCAGCaccGGGUGgcacAGCGUCuUGAGcGCg -3' miRNA: 3'- -CGUGUCGa--CCUAC----UCGCAGuACUC-UG- -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 198921 | 0.67 | 0.982529 |
Target: 5'- aGCAgGGCguagaGGAUGGG-GUUgAUGAGGCa -3' miRNA: 3'- -CGUgUCGa----CCUACUCgCAG-UACUCUG- -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 238229 | 0.67 | 0.982529 |
Target: 5'- gGCACGGCguc--GAGCGUCGuUGAGGu -3' miRNA: 3'- -CGUGUCGaccuaCUCGCAGU-ACUCUg -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 213117 | 0.67 | 0.98615 |
Target: 5'- aCGC-GCUGGGUGuGGCGUgGUGcGGCc -3' miRNA: 3'- cGUGuCGACCUAC-UCGCAgUACuCUG- -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 172273 | 0.67 | 0.986799 |
Target: 5'- gGCACAGCUGG-UGGGUGugggucuccuUCAUGucccacacagccuuGACg -3' miRNA: 3'- -CGUGUCGACCuACUCGC----------AGUACu-------------CUG- -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 32427 | 0.67 | 0.986799 |
Target: 5'- cGCACGGCcuccugacgguuacGGAUGGGCGUCA-GAu-- -3' miRNA: 3'- -CGUGUCGa-------------CCUACUCGCAGUaCUcug -5' |
|||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 59171 | 0.67 | 0.989165 |
Target: 5'- gGCACGGCgccgcGGGCaGUCAgGAGACg -3' miRNA: 3'- -CGUGUCGaccuaCUCG-CAGUaCUCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home