Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 17184 | 0.67 | 0.987729 |
Target: 5'- -gGCAGCUGGGcaGGCGcaUCGUG-GACg -3' miRNA: 3'- cgUGUCGACCUacUCGC--AGUACuCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 198921 | 0.67 | 0.982529 |
Target: 5'- aGCAgGGCguagaGGAUGGG-GUUgAUGAGGCa -3' miRNA: 3'- -CGUgUCGa----CCUACUCgCAG-UACUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 122710 | 0.67 | 0.989165 |
Target: 5'- gGCGgGGCUGGA--GGCgGUCGUGgucguGGGCg -3' miRNA: 3'- -CGUgUCGACCUacUCG-CAGUAC-----UCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 221834 | 0.67 | 0.989165 |
Target: 5'- uGCaACAGCUGGccgcuGUGGGCGUCcaccaccaGGGAa -3' miRNA: 3'- -CG-UGUCGACC-----UACUCGCAGua------CUCUg -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 103403 | 0.67 | 0.984419 |
Target: 5'- uGCGC-GCUGG-UG-GCGUaCAUGAGGu -3' miRNA: 3'- -CGUGuCGACCuACuCGCA-GUACUCUg -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 213117 | 0.67 | 0.98615 |
Target: 5'- aCGC-GCUGGGUGuGGCGUgGUGcGGCc -3' miRNA: 3'- cGUGuCGACCUAC-UCGCAgUACuCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 172273 | 0.67 | 0.986799 |
Target: 5'- gGCACAGCUGG-UGGGUGugggucuccuUCAUGucccacacagccuuGACg -3' miRNA: 3'- -CGUGUCGACCuACUCGC----------AGUACu-------------CUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 124165 | 0.68 | 0.980471 |
Target: 5'- aGCgGCGGCUGGA-GAGCGa---GAGGCc -3' miRNA: 3'- -CG-UGUCGACCUaCUCGCaguaCUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 177907 | 0.68 | 0.973213 |
Target: 5'- aGCGgGGCgagcgGGA-GGGCGUCGUcGGGAg -3' miRNA: 3'- -CGUgUCGa----CCUaCUCGCAGUA-CUCUg -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 7808 | 0.68 | 0.967399 |
Target: 5'- aGCgGCAGCUGGAc-GGCGUCA--AGGCc -3' miRNA: 3'- -CG-UGUCGACCUacUCGCAGUacUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 155616 | 0.68 | 0.972393 |
Target: 5'- gGCGCGGCgccGGGUGAcgcaGUGUCGUacgcgaccgagcaaGGGACg -3' miRNA: 3'- -CGUGUCGa--CCUACU----CGCAGUA--------------CUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 157041 | 0.68 | 0.967399 |
Target: 5'- gGCGCGGUcGGAgGAGCG-CGgcggGGGGCg -3' miRNA: 3'- -CGUGUCGaCCUaCUCGCaGUa---CUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 205174 | 0.68 | 0.978238 |
Target: 5'- gGCuugUAGCUGGugaucucgguAUGAGgGUCcgGAGGCc -3' miRNA: 3'- -CGu--GUCGACC----------UACUCgCAGuaCUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 87662 | 0.68 | 0.978238 |
Target: 5'- gGCGCAGCccacgaugUGGuugcUGAGCGUg--GAGGCg -3' miRNA: 3'- -CGUGUCG--------ACCu---ACUCGCAguaCUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 194922 | 0.68 | 0.975821 |
Target: 5'- uGCGCAuGCUGG-UGcucGGCGUCGUcuuGGACg -3' miRNA: 3'- -CGUGU-CGACCuAC---UCGCAGUAc--UCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 100128 | 0.68 | 0.970408 |
Target: 5'- cCGCGGCUGGcgGuccuGCGggaaggcCGUGGGGCu -3' miRNA: 3'- cGUGUCGACCuaCu---CGCa------GUACUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 168438 | 0.68 | 0.967399 |
Target: 5'- cCGCGGCggcgGGcgugaaGAGCGUgAUGGGGCg -3' miRNA: 3'- cGUGUCGa---CCua----CUCGCAgUACUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 40062 | 0.69 | 0.960743 |
Target: 5'- uGCACAGacuCUGGAUGcGCGUC---AGGCa -3' miRNA: 3'- -CGUGUC---GACCUACuCGCAGuacUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 166222 | 0.69 | 0.957085 |
Target: 5'- uGUACAGCUGGuagaaGAGCGUgAUGccgcccGGCg -3' miRNA: 3'- -CGUGUCGACCua---CUCGCAgUACu-----CUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 120398 | 0.69 | 0.953202 |
Target: 5'- gGCACAGa-GGAUGGGUG-CAaaGAGACa -3' miRNA: 3'- -CGUGUCgaCCUACUCGCaGUa-CUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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