Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 35216 | 0.71 | 0.901381 |
Target: 5'- cGCGCGGgUcGGAUcGAGCGUCcucGGGGCg -3' miRNA: 3'- -CGUGUCgA-CCUA-CUCGCAGua-CUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 138719 | 0.71 | 0.907637 |
Target: 5'- gGCGCuGGCUGG-UGGuGCGUCcgGAGGg -3' miRNA: 3'- -CGUG-UCGACCuACU-CGCAGuaCUCUg -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 126462 | 0.71 | 0.919437 |
Target: 5'- uGUACAGCaUGGAggccAGCGUCAUGAccGAg -3' miRNA: 3'- -CGUGUCG-ACCUac--UCGCAGUACU--CUg -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 101421 | 0.7 | 0.94016 |
Target: 5'- cGUGCGGCUGGAaGAGCaGUaCGUuGGGCg -3' miRNA: 3'- -CGUGUCGACCUaCUCG-CA-GUAcUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 91469 | 0.7 | 0.944742 |
Target: 5'- cGCGCAGCUcgcGGGUGuauGCGUgGguggGGGAUg -3' miRNA: 3'- -CGUGUCGA---CCUACu--CGCAgUa---CUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 120398 | 0.69 | 0.953202 |
Target: 5'- gGCACAGa-GGAUGGGUG-CAaaGAGACa -3' miRNA: 3'- -CGUGUCgaCCUACUCGCaGUa-CUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 166222 | 0.69 | 0.957085 |
Target: 5'- uGUACAGCUGGuagaaGAGCGUgAUGccgcccGGCg -3' miRNA: 3'- -CGUGUCGACCua---CUCGCAgUACu-----CUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 238229 | 0.67 | 0.982529 |
Target: 5'- gGCACGGCguc--GAGCGUCGuUGAGGu -3' miRNA: 3'- -CGUGUCGaccuaCUCGCAGU-ACUCUg -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 205174 | 0.68 | 0.978238 |
Target: 5'- gGCuugUAGCUGGugaucucgguAUGAGgGUCcgGAGGCc -3' miRNA: 3'- -CGu--GUCGACC----------UACUCgCAGuaCUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 87662 | 0.68 | 0.978238 |
Target: 5'- gGCGCAGCccacgaugUGGuugcUGAGCGUg--GAGGCg -3' miRNA: 3'- -CGUGUCG--------ACCu---ACUCGCAguaCUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 194922 | 0.68 | 0.975821 |
Target: 5'- uGCGCAuGCUGG-UGcucGGCGUCGUcuuGGACg -3' miRNA: 3'- -CGUGU-CGACCuAC---UCGCAGUAc--UCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 100128 | 0.68 | 0.970408 |
Target: 5'- cCGCGGCUGGcgGuccuGCGggaaggcCGUGGGGCu -3' miRNA: 3'- cGUGUCGACCuaCu---CGCa------GUACUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 168438 | 0.68 | 0.967399 |
Target: 5'- cCGCGGCggcgGGcgugaaGAGCGUgAUGGGGCg -3' miRNA: 3'- cGUGUCGa---CCua----CUCGCAgUACUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 40062 | 0.69 | 0.960743 |
Target: 5'- uGCACAGacuCUGGAUGcGCGUC---AGGCa -3' miRNA: 3'- -CGUGUC---GACCUACuCGCAGuacUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 46377 | 0.71 | 0.919437 |
Target: 5'- aCGCGGCUGuGAgGGGCGcggggugCGUGGGGCg -3' miRNA: 3'- cGUGUCGAC-CUaCUCGCa------GUACUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 104831 | 0.71 | 0.901381 |
Target: 5'- aGUGCAGCUGGAucuccucggUGAagGCGUUGUG-GACg -3' miRNA: 3'- -CGUGUCGACCU---------ACU--CGCAGUACuCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 18572 | 0.72 | 0.888171 |
Target: 5'- cGCGCAGCUGGA-GAGCG-CGcucGACu -3' miRNA: 3'- -CGUGUCGACCUaCUCGCaGUacuCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 102462 | 0.73 | 0.843251 |
Target: 5'- gGCGCAGCaGGAUGAGCuggCAUaGGAUg -3' miRNA: 3'- -CGUGUCGaCCUACUCGca-GUAcUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 162243 | 0.74 | 0.800479 |
Target: 5'- gGCGCuGGCgGGGUGGGCGUCAacgGGGGu -3' miRNA: 3'- -CGUG-UCGaCCUACUCGCAGUa--CUCUg -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 124483 | 0.66 | 0.990467 |
Target: 5'- cGgGCGGCUGGucguAGCG-CGUGAGGa -3' miRNA: 3'- -CgUGUCGACCuac-UCGCaGUACUCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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