miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 3' -52.5 NC_003521.1 + 104831 0.71 0.901381
Target:  5'- aGUGCAGCUGGAucuccucggUGAagGCGUUGUG-GACg -3'
miRNA:   3'- -CGUGUCGACCU---------ACU--CGCAGUACuCUG- -5'
14022 3' -52.5 NC_003521.1 + 106596 0.66 0.992701
Target:  5'- cGguCGGUgaGGAccgUGAGCaUCGUGGGACg -3'
miRNA:   3'- -CguGUCGa-CCU---ACUCGcAGUACUCUG- -5'
14022 3' -52.5 NC_003521.1 + 108944 0.66 0.991643
Target:  5'- uGCGCGGCUGucGGUG-GCGUCuAUGAc-- -3'
miRNA:   3'- -CGUGUCGAC--CUACuCGCAG-UACUcug -5'
14022 3' -52.5 NC_003521.1 + 116884 0.66 0.99365
Target:  5'- gGCGCGGCUGcGgcGGcGCGcCGgcggGAGACc -3'
miRNA:   3'- -CGUGUCGAC-CuaCU-CGCaGUa---CUCUG- -5'
14022 3' -52.5 NC_003521.1 + 119593 0.66 0.992701
Target:  5'- cGCugGGCggcGGGUGcAGCGUCucGUGcugcagguGGACg -3'
miRNA:   3'- -CGugUCGa--CCUAC-UCGCAG--UAC--------UCUG- -5'
14022 3' -52.5 NC_003521.1 + 120398 0.69 0.953202
Target:  5'- gGCACAGa-GGAUGGGUG-CAaaGAGACa -3'
miRNA:   3'- -CGUGUCgaCCUACUCGCaGUa-CUCUG- -5'
14022 3' -52.5 NC_003521.1 + 122710 0.67 0.989165
Target:  5'- gGCGgGGCUGGA--GGCgGUCGUGgucguGGGCg -3'
miRNA:   3'- -CGUgUCGACCUacUCG-CAGUAC-----UCUG- -5'
14022 3' -52.5 NC_003521.1 + 124165 0.68 0.980471
Target:  5'- aGCgGCGGCUGGA-GAGCGa---GAGGCc -3'
miRNA:   3'- -CG-UGUCGACCUaCUCGCaguaCUCUG- -5'
14022 3' -52.5 NC_003521.1 + 124483 0.66 0.990467
Target:  5'- cGgGCGGCUGGucguAGCG-CGUGAGGa -3'
miRNA:   3'- -CgUGUCGACCuac-UCGCaGUACUCUg -5'
14022 3' -52.5 NC_003521.1 + 126462 0.71 0.919437
Target:  5'- uGUACAGCaUGGAggccAGCGUCAUGAccGAg -3'
miRNA:   3'- -CGUGUCG-ACCUac--UCGCAGUACU--CUg -5'
14022 3' -52.5 NC_003521.1 + 126868 0.66 0.990467
Target:  5'- uCGCGGCaGGccu-GCGUCAgUGAGACg -3'
miRNA:   3'- cGUGUCGaCCuacuCGCAGU-ACUCUG- -5'
14022 3' -52.5 NC_003521.1 + 128182 0.66 0.992701
Target:  5'- cGUGCAGCaccGGGUGgcacAGCGUCuUGAGcGCg -3'
miRNA:   3'- -CGUGUCGa--CCUAC----UCGCAGuACUC-UG- -5'
14022 3' -52.5 NC_003521.1 + 130013 0.66 0.991643
Target:  5'- cGCGCAacggccGCUGGcuuucAGCGUCAUGgagGGGCa -3'
miRNA:   3'- -CGUGU------CGACCuac--UCGCAGUAC---UCUG- -5'
14022 3' -52.5 NC_003521.1 + 138719 0.71 0.907637
Target:  5'- gGCGCuGGCUGG-UGGuGCGUCcgGAGGg -3'
miRNA:   3'- -CGUG-UCGACCuACU-CGCAGuaCUCUg -5'
14022 3' -52.5 NC_003521.1 + 139936 0.66 0.994576
Target:  5'- gGCACGGCcGGAaggccagcucguccaGGGCGcUCuUGAGGCg -3'
miRNA:   3'- -CGUGUCGaCCUa--------------CUCGC-AGuACUCUG- -5'
14022 3' -52.5 NC_003521.1 + 141954 0.66 0.990467
Target:  5'- gGCGCccaccuGCUGGGcgacGAGCGUCAgGAGcuGCa -3'
miRNA:   3'- -CGUGu-----CGACCUa---CUCGCAGUaCUC--UG- -5'
14022 3' -52.5 NC_003521.1 + 155616 0.68 0.972393
Target:  5'- gGCGCGGCgccGGGUGAcgcaGUGUCGUacgcgaccgagcaaGGGACg -3'
miRNA:   3'- -CGUGUCGa--CCUACU----CGCAGUA--------------CUCUG- -5'
14022 3' -52.5 NC_003521.1 + 157041 0.68 0.967399
Target:  5'- gGCGCGGUcGGAgGAGCG-CGgcggGGGGCg -3'
miRNA:   3'- -CGUGUCGaCCUaCUCGCaGUa---CUCUG- -5'
14022 3' -52.5 NC_003521.1 + 162243 0.74 0.800479
Target:  5'- gGCGCuGGCgGGGUGGGCGUCAacgGGGGu -3'
miRNA:   3'- -CGUG-UCGaCCUACUCGCAGUa--CUCUg -5'
14022 3' -52.5 NC_003521.1 + 166222 0.69 0.957085
Target:  5'- uGUACAGCUGGuagaaGAGCGUgAUGccgcccGGCg -3'
miRNA:   3'- -CGUGUCGACCua---CUCGCAgUACu-----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.