Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14022 | 3' | -52.5 | NC_003521.1 | + | 238229 | 0.67 | 0.982529 |
Target: 5'- gGCACGGCguc--GAGCGUCGuUGAGGu -3' miRNA: 3'- -CGUGUCGaccuaCUCGCAGU-ACUCUg -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 221834 | 0.67 | 0.989165 |
Target: 5'- uGCaACAGCUGGccgcuGUGGGCGUCcaccaccaGGGAa -3' miRNA: 3'- -CG-UGUCGACC-----UACUCGCAGua------CUCUg -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 219274 | 0.66 | 0.992701 |
Target: 5'- cGCAgGgGCUGGcacAUGAGCGggccCAUGaAGGCc -3' miRNA: 3'- -CGUgU-CGACC---UACUCGCa---GUAC-UCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 215267 | 0.71 | 0.901381 |
Target: 5'- -aACAGCUGGAaGGGCGagAUgcaGAGGCa -3' miRNA: 3'- cgUGUCGACCUaCUCGCagUA---CUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 213117 | 0.67 | 0.98615 |
Target: 5'- aCGC-GCUGGGUGuGGCGUgGUGcGGCc -3' miRNA: 3'- cGUGuCGACCUAC-UCGCAgUACuCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 205174 | 0.68 | 0.978238 |
Target: 5'- gGCuugUAGCUGGugaucucgguAUGAGgGUCcgGAGGCc -3' miRNA: 3'- -CGu--GUCGACC----------UACUCgCAGuaCUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 203539 | 0.67 | 0.989165 |
Target: 5'- gGCGCAGCUGugucacaaGAUGGGgGcCAUGAaucucGACc -3' miRNA: 3'- -CGUGUCGAC--------CUACUCgCaGUACU-----CUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 198921 | 0.67 | 0.982529 |
Target: 5'- aGCAgGGCguagaGGAUGGG-GUUgAUGAGGCa -3' miRNA: 3'- -CGUgUCGa----CCUACUCgCAG-UACUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 194922 | 0.68 | 0.975821 |
Target: 5'- uGCGCAuGCUGG-UGcucGGCGUCGUcuuGGACg -3' miRNA: 3'- -CGUGU-CGACCuAC---UCGCAGUAc--UCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 179876 | 1.13 | 0.005277 |
Target: 5'- gGCACAGCUGGAUGAGCGUCAUGAGACg -3' miRNA: 3'- -CGUGUCGACCUACUCGCAGUACUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 177907 | 0.68 | 0.973213 |
Target: 5'- aGCGgGGCgagcgGGA-GGGCGUCGUcGGGAg -3' miRNA: 3'- -CGUgUCGa----CCUaCUCGCAGUA-CUCUg -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 177803 | 0.7 | 0.935339 |
Target: 5'- ----cGCUGG-UGGGCGUCGUG-GGCg -3' miRNA: 3'- cguguCGACCuACUCGCAGUACuCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 172273 | 0.67 | 0.986799 |
Target: 5'- gGCACAGCUGG-UGGGUGugggucuccuUCAUGucccacacagccuuGACg -3' miRNA: 3'- -CGUGUCGACCuACUCGC----------AGUACu-------------CUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 168438 | 0.68 | 0.967399 |
Target: 5'- cCGCGGCggcgGGcgugaaGAGCGUgAUGGGGCg -3' miRNA: 3'- cGUGUCGa---CCua----CUCGCAgUACUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 166222 | 0.69 | 0.957085 |
Target: 5'- uGUACAGCUGGuagaaGAGCGUgAUGccgcccGGCg -3' miRNA: 3'- -CGUGUCGACCua---CUCGCAgUACu-----CUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 162243 | 0.74 | 0.800479 |
Target: 5'- gGCGCuGGCgGGGUGGGCGUCAacgGGGGu -3' miRNA: 3'- -CGUG-UCGaCCUACUCGCAGUa--CUCUg -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 157041 | 0.68 | 0.967399 |
Target: 5'- gGCGCGGUcGGAgGAGCG-CGgcggGGGGCg -3' miRNA: 3'- -CGUGUCGaCCUaCUCGCaGUa---CUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 155616 | 0.68 | 0.972393 |
Target: 5'- gGCGCGGCgccGGGUGAcgcaGUGUCGUacgcgaccgagcaaGGGACg -3' miRNA: 3'- -CGUGUCGa--CCUACU----CGCAGUA--------------CUCUG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 141954 | 0.66 | 0.990467 |
Target: 5'- gGCGCccaccuGCUGGGcgacGAGCGUCAgGAGcuGCa -3' miRNA: 3'- -CGUGu-----CGACCUa---CUCGCAGUaCUC--UG- -5' |
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14022 | 3' | -52.5 | NC_003521.1 | + | 139936 | 0.66 | 0.994576 |
Target: 5'- gGCACGGCcGGAaggccagcucguccaGGGCGcUCuUGAGGCg -3' miRNA: 3'- -CGUGUCGaCCUa--------------CUCGC-AGuACUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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