Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14022 | 5' | -56.3 | NC_003521.1 | + | 123631 | 0.71 | 0.81817 |
Target: 5'- uCCACCGcCUCGGGCggcGGCagcgaCgGCGGGu -3' miRNA: 3'- -GGUGGCaGAGCUUGa--CUGg----GaCGCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 44619 | 0.71 | 0.81817 |
Target: 5'- aCACaCG-CUCGAGCUGcagaugauGCgCCUGUGGGu -3' miRNA: 3'- gGUG-GCaGAGCUUGAC--------UG-GGACGCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 163448 | 0.7 | 0.834217 |
Target: 5'- gCCACCGUCuUCGA----GCCCgugGUGGGc -3' miRNA: 3'- -GGUGGCAG-AGCUugacUGGGa--CGCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 61973 | 0.7 | 0.841996 |
Target: 5'- aCAUCGUCUCGGug-GACCaagcgcaGCGGGa -3' miRNA: 3'- gGUGGCAGAGCUugaCUGGga-----CGCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 84049 | 0.7 | 0.864279 |
Target: 5'- gCCACCuUCUCGAGCgagaGGCCCUGg--- -3' miRNA: 3'- -GGUGGcAGAGCUUGa---CUGGGACgccc -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 197135 | 0.69 | 0.884871 |
Target: 5'- -aGCCaUCUgGGACgUGGCCCUGCuGGa -3' miRNA: 3'- ggUGGcAGAgCUUG-ACUGGGACGcCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 17793 | 0.69 | 0.891337 |
Target: 5'- -gGCCGUCggCGuGCUGGCCgUGCGa- -3' miRNA: 3'- ggUGGCAGa-GCuUGACUGGgACGCcc -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 68806 | 0.69 | 0.891337 |
Target: 5'- gCGCCGUC-CGGAUaGA-CUUGCGGGc -3' miRNA: 3'- gGUGGCAGaGCUUGaCUgGGACGCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 210349 | 0.69 | 0.893867 |
Target: 5'- uCCGCCGUCaugacugacgugggaUUGAGCaaGGCCaCUGaCGGGg -3' miRNA: 3'- -GGUGGCAG---------------AGCUUGa-CUGG-GAC-GCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 170755 | 0.69 | 0.897599 |
Target: 5'- cCCGCUGUa-CGuGCUGGCCCgacagGCGGu -3' miRNA: 3'- -GGUGGCAgaGCuUGACUGGGa----CGCCc -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 173238 | 0.69 | 0.903653 |
Target: 5'- cCCGCgUGUUggCGAcuCUGGCCC-GCGGGg -3' miRNA: 3'- -GGUG-GCAGa-GCUu-GACUGGGaCGCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 121021 | 0.69 | 0.903653 |
Target: 5'- aCCACCGUgUCGccccGCUGGCgCCggaagGUGGa -3' miRNA: 3'- -GGUGGCAgAGCu---UGACUG-GGa----CGCCc -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 7011 | 0.68 | 0.909497 |
Target: 5'- aUACCGUaCUUGGGCUGGCgCUGCu-- -3' miRNA: 3'- gGUGGCA-GAGCUUGACUGgGACGccc -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 62646 | 0.68 | 0.909497 |
Target: 5'- aCACCGUCUCGuagguauCUGcguguucgUCCUGCGGu -3' miRNA: 3'- gGUGGCAGAGCuu-----GACu-------GGGACGCCc -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 189100 | 0.68 | 0.915128 |
Target: 5'- gCACCGagUCGGACgacgaggaGACCacgCUGUGGGa -3' miRNA: 3'- gGUGGCagAGCUUGa-------CUGG---GACGCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 206156 | 0.68 | 0.915128 |
Target: 5'- aCUGCC-UCUaCGAGCUGGCcuccgaCCUGgGGGg -3' miRNA: 3'- -GGUGGcAGA-GCUUGACUG------GGACgCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 47903 | 0.68 | 0.920546 |
Target: 5'- cUCGCCGUCcUGA--UGGCCCUGaCGGc -3' miRNA: 3'- -GGUGGCAGaGCUugACUGGGAC-GCCc -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 171348 | 0.68 | 0.920546 |
Target: 5'- aCCACCGUCugaccuUCGAcgUGAUCCUGCc-- -3' miRNA: 3'- -GGUGGCAG------AGCUugACUGGGACGccc -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 99880 | 0.68 | 0.920546 |
Target: 5'- gCCACCGUCUCcAugUaGGggUCgUGCGGGu -3' miRNA: 3'- -GGUGGCAGAGcUugA-CU--GGgACGCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 210728 | 0.68 | 0.930737 |
Target: 5'- aUCACCGUCcCGGAaucguaGGCCgUgGCGGGg -3' miRNA: 3'- -GGUGGCAGaGCUUga----CUGGgA-CGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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