Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14023 | 3' | -53.9 | NC_003521.1 | + | 179029 | 1.07 | 0.00946 |
Target: 5'- cAACGUCUUUUCCGCAUCCACGCCGGAg -3' miRNA: 3'- -UUGCAGAAAAGGCGUAGGUGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 86039 | 0.75 | 0.640109 |
Target: 5'- uGACGUUgaggUUCCGC-UCCACGCCGu- -3' miRNA: 3'- -UUGCAGaa--AAGGCGuAGGUGCGGCcu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 212502 | 0.75 | 0.660326 |
Target: 5'- cGGCGg----UCCGCAggCCGCGCCGGGg -3' miRNA: 3'- -UUGCagaaaAGGCGUa-GGUGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 123473 | 0.75 | 0.680454 |
Target: 5'- gGGCGUCagcUCCGUGUCCGuCGCCGGc -3' miRNA: 3'- -UUGCAGaaaAGGCGUAGGU-GCGGCCu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 88449 | 0.74 | 0.690464 |
Target: 5'- aGACGUCg--UCCGCcUCgGCGUCGGGc -3' miRNA: 3'- -UUGCAGaaaAGGCGuAGgUGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 156068 | 0.73 | 0.777361 |
Target: 5'- cAACGUCg---CCGCcgCCGCGCCcGAg -3' miRNA: 3'- -UUGCAGaaaaGGCGuaGGUGCGGcCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 23076 | 0.73 | 0.786499 |
Target: 5'- cGCGUCUguggugUCUGCGUCCgugGCCGGGc -3' miRNA: 3'- uUGCAGAaa----AGGCGUAGGug-CGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 187468 | 0.72 | 0.7955 |
Target: 5'- -cUGUCggccccUCCGCcgCCGCGCCGGc -3' miRNA: 3'- uuGCAGaaa---AGGCGuaGGUGCGGCCu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 203313 | 0.72 | 0.821607 |
Target: 5'- gGACGUCgcugaugUCCGCGggCCcgaaaACGCCGGGg -3' miRNA: 3'- -UUGCAGaaa----AGGCGUa-GG-----UGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 143085 | 0.72 | 0.829983 |
Target: 5'- uACGUCggaUUCGCAgCCGcCGCCGGAg -3' miRNA: 3'- uUGCAGaaaAGGCGUaGGU-GCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 70692 | 0.71 | 0.834924 |
Target: 5'- cGGCGUCUgcgCCGCAagcugcgucggcgCCuGCGCCGGAu -3' miRNA: 3'- -UUGCAGAaaaGGCGUa------------GG-UGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 180887 | 0.71 | 0.838183 |
Target: 5'- -cUGUUga-UCgGCGUCCACGUCGGAg -3' miRNA: 3'- uuGCAGaaaAGgCGUAGGUGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 191216 | 0.71 | 0.854025 |
Target: 5'- -gUGUCc--UCCGCGUCCccaGCGCCGGu -3' miRNA: 3'- uuGCAGaaaAGGCGUAGG---UGCGGCCu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 26140 | 0.71 | 0.854026 |
Target: 5'- cAACGUCguggucUUCCGCGUCUACggacugcugcuGCUGGAg -3' miRNA: 3'- -UUGCAGaa----AAGGCGUAGGUG-----------CGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 48786 | 0.71 | 0.861655 |
Target: 5'- cGCGUCUg--CCGCG--CACGCCGGc -3' miRNA: 3'- uUGCAGAaaaGGCGUagGUGCGGCCu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 226911 | 0.7 | 0.883307 |
Target: 5'- cAGCG-CggccUCCGCGgcccccUCCGCGCCGGGc -3' miRNA: 3'- -UUGCaGaaa-AGGCGU------AGGUGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 226832 | 0.7 | 0.883307 |
Target: 5'- uGGgGUCcucgcCCGCcgCCGCGCCGGGc -3' miRNA: 3'- -UUgCAGaaaa-GGCGuaGGUGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 53663 | 0.7 | 0.890095 |
Target: 5'- cACGUUgcUUCCGCuccugCCGcCGCCGGGc -3' miRNA: 3'- uUGCAGaaAAGGCGua---GGU-GCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 164498 | 0.7 | 0.892749 |
Target: 5'- -cCGUCgccUCCGCAgcugucgccgccaccUCCGCuGCCGGAc -3' miRNA: 3'- uuGCAGaaaAGGCGU---------------AGGUG-CGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 103445 | 0.7 | 0.903002 |
Target: 5'- cGCGUCUgcaccagUUCGCGUCCGCggauGCgGGAg -3' miRNA: 3'- uUGCAGAaa-----AGGCGUAGGUG----CGgCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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