miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14024 5' -56.7 NC_003521.1 + 86320 0.68 0.864921
Target:  5'- gGCCgCCAGCACCUGGaUGcUGGaggucuUGCc -3'
miRNA:   3'- gUGGaGGUCGUGGACCaGCuACC------ACG- -5'
14024 5' -56.7 NC_003521.1 + 114370 0.68 0.871391
Target:  5'- gGCCUCCAuGCuguacaagaucucGCCgGuGUCGcUGGUGCu -3'
miRNA:   3'- gUGGAGGU-CG-------------UGGaC-CAGCuACCACG- -5'
14024 5' -56.7 NC_003521.1 + 22288 0.68 0.872099
Target:  5'- aCACCa-CGGCAaUUGGUCGGUGGaGCu -3'
miRNA:   3'- -GUGGagGUCGUgGACCAGCUACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 166668 0.68 0.872099
Target:  5'- gGCCagCGGCACCUGGgcccCG-UGGcGCg -3'
miRNA:   3'- gUGGagGUCGUGGACCa---GCuACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 134285 0.68 0.88181
Target:  5'- gCugCUCCAGCAgguacucgaugggguCgUGGUUGAgcuugaUGGUGUa -3'
miRNA:   3'- -GugGAGGUCGU---------------GgACCAGCU------ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 11556 0.68 0.885848
Target:  5'- aCGCCUCCGGCGCCgucGUgCGccGGacucUGCg -3'
miRNA:   3'- -GUGGAGGUCGUGGac-CA-GCuaCC----ACG- -5'
14024 5' -56.7 NC_003521.1 + 110835 0.68 0.885848
Target:  5'- cCGCCgCCGGCGCagcGGcagCGAcGGUGCa -3'
miRNA:   3'- -GUGGaGGUCGUGga-CCa--GCUaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 155562 0.68 0.89241
Target:  5'- gCGCCUgcgaCCGGCGCa-GGa-GGUGGUGCa -3'
miRNA:   3'- -GUGGA----GGUCGUGgaCCagCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 138704 0.68 0.89241
Target:  5'- aGCCUgggCGGCACgggcgCUGGcUGGUGGUGCg -3'
miRNA:   3'- gUGGAg--GUCGUG-----GACCaGCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 73552 0.68 0.89241
Target:  5'- uCACgCUCaacCACCUGGcCG-UGGUGCg -3'
miRNA:   3'- -GUG-GAGgucGUGGACCaGCuACCACG- -5'
14024 5' -56.7 NC_003521.1 + 156612 0.68 0.89241
Target:  5'- gGCCUCUcGCGCCUGGUgcugcgCGAcgcccUGG-GCu -3'
miRNA:   3'- gUGGAGGuCGUGGACCA------GCU-----ACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 168011 0.68 0.89241
Target:  5'- aGCCUgCuGCugCUGGU-GGUGGUagGCg -3'
miRNA:   3'- gUGGAgGuCGugGACCAgCUACCA--CG- -5'
14024 5' -56.7 NC_003521.1 + 154633 0.68 0.89241
Target:  5'- uCGCCUCCaccguGGC-CCgcgaGUCGcUGGUGCg -3'
miRNA:   3'- -GUGGAGG-----UCGuGGac--CAGCuACCACG- -5'
14024 5' -56.7 NC_003521.1 + 37632 0.67 0.898133
Target:  5'- gGCCUCCGGCggugaacAUCUGGU-GGUGGcauucUGCc -3'
miRNA:   3'- gUGGAGGUCG-------UGGACCAgCUACC-----ACG- -5'
14024 5' -56.7 NC_003521.1 + 26196 0.67 0.898758
Target:  5'- uGCuCUUCAGCACgCUGGUCuGGcUGG-GCu -3'
miRNA:   3'- gUG-GAGGUCGUG-GACCAG-CU-ACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 123685 0.67 0.904889
Target:  5'- cCAUCUgcgCCAGCugCUGGUCGAUcaucgaGCg -3'
miRNA:   3'- -GUGGA---GGUCGugGACCAGCUAcca---CG- -5'
14024 5' -56.7 NC_003521.1 + 15508 0.67 0.904889
Target:  5'- -uUCUCCGGCGCUcgGGUUGgcGGcgGCa -3'
miRNA:   3'- guGGAGGUCGUGGa-CCAGCuaCCa-CG- -5'
14024 5' -56.7 NC_003521.1 + 152959 0.67 0.909051
Target:  5'- gGCCUggCCAGCGCCUGcgaggacaccuacaaCGAUGG-GCg -3'
miRNA:   3'- gUGGA--GGUCGUGGACca-------------GCUACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 111280 0.67 0.910802
Target:  5'- cCGCCgugCCAGCGCCgccgCGAUGGa-- -3'
miRNA:   3'- -GUGGa--GGUCGUGGaccaGCUACCacg -5'
14024 5' -56.7 NC_003521.1 + 6698 0.67 0.910802
Target:  5'- gCGCCcgCgAGCGCUgcugGGUCucgccGUGGUGCa -3'
miRNA:   3'- -GUGGa-GgUCGUGGa---CCAGc----UACCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.