miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14026 3' -59.1 NC_003521.1 + 172077 1.06 0.003687
Target:  5'- cAGGACCGUCAGCGGCGGCGUGAUGAAg -3'
miRNA:   3'- -UCCUGGCAGUCGCCGCCGCACUACUU- -5'
14026 3' -59.1 NC_003521.1 + 228710 0.69 0.70152
Target:  5'- aAGGAgCG-CGGCGGCGGCaUGAUu-- -3'
miRNA:   3'- -UCCUgGCaGUCGCCGCCGcACUAcuu -5'
14026 3' -59.1 NC_003521.1 + 58 0.68 0.739526
Target:  5'- cGGaACCGguuUCcGCGGCGGCGUGcgGc- -3'
miRNA:   3'- uCC-UGGC---AGuCGCCGCCGCACuaCuu -5'
14026 3' -59.1 NC_003521.1 + 172324 0.66 0.872771
Target:  5'- cAGGcCgGUC-GCGGCGGaCG-GGUGAGg -3'
miRNA:   3'- -UCCuGgCAGuCGCCGCC-GCaCUACUU- -5'
14026 3' -59.1 NC_003521.1 + 184842 0.73 0.480276
Target:  5'- uGGACCGgCuGCGGCcccugcacaucGGCGUGGUGGGg -3'
miRNA:   3'- uCCUGGCaGuCGCCG-----------CCGCACUACUU- -5'
14026 3' -59.1 NC_003521.1 + 169443 0.72 0.545645
Target:  5'- cGGACgacggCGUCGGCGGCGGCG-GGUu-- -3'
miRNA:   3'- uCCUG-----GCAGUCGCCGCCGCaCUAcuu -5'
14026 3' -59.1 NC_003521.1 + 122658 0.71 0.594033
Target:  5'- cGGGCguCGUCuGCGGCGGUGgGGUGGc -3'
miRNA:   3'- uCCUG--GCAGuCGCCGCCGCaCUACUu -5'
14026 3' -59.1 NC_003521.1 + 76399 0.71 0.613609
Target:  5'- uGGcGCUGcuagcacCAGCGGCGGUGUGGUGGu -3'
miRNA:   3'- uCC-UGGCa------GUCGCCGCCGCACUACUu -5'
14026 3' -59.1 NC_003521.1 + 120537 0.7 0.623419
Target:  5'- aAGGGCCcUCGGCGGCcGGCGgucccgGggGAGc -3'
miRNA:   3'- -UCCUGGcAGUCGCCG-CCGCa-----CuaCUU- -5'
14026 3' -59.1 NC_003521.1 + 123560 0.69 0.70152
Target:  5'- -cGGCCGacgaCGGCGGUGGCGgGAUGGc -3'
miRNA:   3'- ucCUGGCa---GUCGCCGCCGCaCUACUu -5'
14026 3' -59.1 NC_003521.1 + 108032 0.7 0.643052
Target:  5'- cGG--CGUCAgGCGGCGGCGgGAUGAc -3'
miRNA:   3'- uCCugGCAGU-CGCCGCCGCaCUACUu -5'
14026 3' -59.1 NC_003521.1 + 104021 0.7 0.623419
Target:  5'- cGGGGUCGUCGGCgGGCaGCGUGAccgUGAGc -3'
miRNA:   3'- -UCCUGGCAGUCG-CCGcCGCACU---ACUU- -5'
14026 3' -59.1 NC_003521.1 + 175036 0.79 0.236496
Target:  5'- aGGGGCCGgccgaaguugucCGGCGGCGGUGUGAUGc- -3'
miRNA:   3'- -UCCUGGCa-----------GUCGCCGCCGCACUACuu -5'
14026 3' -59.1 NC_003521.1 + 210411 0.7 0.652859
Target:  5'- uGGGACCG-CAGCguGGuCGGCGUGGg--- -3'
miRNA:   3'- -UCCUGGCaGUCG--CC-GCCGCACUacuu -5'
14026 3' -59.1 NC_003521.1 + 165143 0.76 0.347547
Target:  5'- uGGACCG-CGGUGcCGGCGUGAUGGu -3'
miRNA:   3'- uCCUGGCaGUCGCcGCCGCACUACUu -5'
14026 3' -59.1 NC_003521.1 + 83595 0.71 0.613609
Target:  5'- cGGACC-UC-GCGGCGGCGU-AUGAc -3'
miRNA:   3'- uCCUGGcAGuCGCCGCCGCAcUACUu -5'
14026 3' -59.1 NC_003521.1 + 123348 0.69 0.695732
Target:  5'- cAGGcCCGUCgccggguguggaggaGGCGGCGGgGgcUGGUGAGa -3'
miRNA:   3'- -UCCuGGCAG---------------UCGCCGCCgC--ACUACUU- -5'
14026 3' -59.1 NC_003521.1 + 37209 0.69 0.720663
Target:  5'- gGGGACCG-CGGUuaGGCGGCcucgggGGUGGAg -3'
miRNA:   3'- -UCCUGGCaGUCG--CCGCCGca----CUACUU- -5'
14026 3' -59.1 NC_003521.1 + 98535 0.74 0.427433
Target:  5'- uGGGCCGcugCAGCGGCGGCG-GGUc-- -3'
miRNA:   3'- uCCUGGCa--GUCGCCGCCGCaCUAcuu -5'
14026 3' -59.1 NC_003521.1 + 190557 0.71 0.564876
Target:  5'- cGGAcCCGgcugCAGCGGCaguacGGCGUGAUcGAGg -3'
miRNA:   3'- uCCU-GGCa---GUCGCCG-----CCGCACUA-CUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.