miRNA display CGI


Results 61 - 80 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 56694 0.73 0.494781
Target:  5'- gCCGCCcaGGCAgcggaugacgcuggUCGCGuCGaCGUCGaGCCGCg -3'
miRNA:   3'- -GGCGG--UCGU--------------AGUGC-GC-GUAGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 100602 0.73 0.496593
Target:  5'- -aGCCGcCAUCAUGCuGCAcggcgacUCGGCCGCc -3'
miRNA:   3'- ggCGGUcGUAGUGCG-CGU-------AGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 1006 0.73 0.497501
Target:  5'- gCCGUaCGGCuucuaCGCGCGCAUCacGCCGCg -3'
miRNA:   3'- -GGCG-GUCGua---GUGCGCGUAGc-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 201234 0.73 0.497501
Target:  5'- gCCGUaCGGCuucuaCGCGCGCAUCacGCCGCg -3'
miRNA:   3'- -GGCG-GUCGua---GUGCGCGUAGc-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 140707 0.73 0.497501
Target:  5'- aCCGCCAGCcgCGgGuCGCAUCcugcuGUCGCa -3'
miRNA:   3'- -GGCGGUCGuaGUgC-GCGUAGc----CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 218572 0.73 0.506612
Target:  5'- cCCGaCCAGCAUCcugaaGCGCGUCaGCCa- -3'
miRNA:   3'- -GGC-GGUCGUAGug---CGCGUAGcCGGcg -5'
14035 5' -59.1 NC_003521.1 + 184580 0.73 0.506612
Target:  5'- uUCGCgCGGCGUCACgGUGUAaugCGGCgCGCa -3'
miRNA:   3'- -GGCG-GUCGUAGUG-CGCGUa--GCCG-GCG- -5'
14035 5' -59.1 NC_003521.1 + 162348 0.73 0.506612
Target:  5'- aCUGCgGGCGUgGgCGCGCAgccccccgucuUCGGUCGCu -3'
miRNA:   3'- -GGCGgUCGUAgU-GCGCGU-----------AGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 220106 0.73 0.506612
Target:  5'- aCCGCCAGCggUACGgGUcgCGuCCGCc -3'
miRNA:   3'- -GGCGGUCGuaGUGCgCGuaGCcGGCG- -5'
14035 5' -59.1 NC_003521.1 + 218621 0.73 0.506612
Target:  5'- gCCGCCAGCG-CGCG-GCGguaagCGGCCa- -3'
miRNA:   3'- -GGCGGUCGUaGUGCgCGUa----GCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 181177 0.73 0.513033
Target:  5'- gCGCCAGCGUCugcCGCaccaacgccugcgaGCcgCGGUCGCc -3'
miRNA:   3'- gGCGGUCGUAGu--GCG--------------CGuaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 197598 0.73 0.515795
Target:  5'- gCGCCcaaugugcGGCGUCugGUGCAgcaGGCCGa -3'
miRNA:   3'- gGCGG--------UCGUAGugCGCGUag-CCGGCg -5'
14035 5' -59.1 NC_003521.1 + 197730 0.73 0.515795
Target:  5'- -gGUCAGCucGUCGCGCGCGUaGGCCa- -3'
miRNA:   3'- ggCGGUCG--UAGUGCGCGUAgCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 171659 0.73 0.515795
Target:  5'- gCgGCgGGCGUCGgGaGCGUCGGCgGCa -3'
miRNA:   3'- -GgCGgUCGUAGUgCgCGUAGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 109568 0.73 0.522262
Target:  5'- gUCGUCGGCuagCAUGCGCGugaagugcgccagcUCGGCCaGCg -3'
miRNA:   3'- -GGCGGUCGua-GUGCGCGU--------------AGCCGG-CG- -5'
14035 5' -59.1 NC_003521.1 + 150898 0.73 0.523189
Target:  5'- aCGCCGGCGUCaucgacuGCGCGCccuuccacggcguGUgGGCCGa -3'
miRNA:   3'- gGCGGUCGUAG-------UGCGCG-------------UAgCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 27697 0.73 0.524116
Target:  5'- uUCGCUgcGGCcgCACcacgccacacccaGCGCGUCGaGCCGCg -3'
miRNA:   3'- -GGCGG--UCGuaGUG-------------CGCGUAGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 127474 0.73 0.525044
Target:  5'- cCCGCCAGCGcCgagAUGCGCGUCaccaGUCGCa -3'
miRNA:   3'- -GGCGGUCGUaG---UGCGCGUAGc---CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 53195 0.73 0.525044
Target:  5'- -gGCCAGCG--GCGCGCGgccCGGCuCGCc -3'
miRNA:   3'- ggCGGUCGUagUGCGCGUa--GCCG-GCG- -5'
14035 5' -59.1 NC_003521.1 + 141596 0.73 0.525044
Target:  5'- aCCGUCAGCuacagcccuaucGUCAuccaggacUGCGCcgCGGCCGUc -3'
miRNA:   3'- -GGCGGUCG------------UAGU--------GCGCGuaGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.