miRNA display CGI


Results 1 - 20 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 163852 1.13 0.001442
Target:  5'- gCCGCCAGCAUCACGCGCAUCGGCCGCg -3'
miRNA:   3'- -GGCGGUCGUAGUGCGCGUAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 130000 0.86 0.096343
Target:  5'- gCGCCGGCGgcgGCGCGCAaCGGCCGCu -3'
miRNA:   3'- gGCGGUCGUag-UGCGCGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 56797 0.85 0.114618
Target:  5'- gCCGCCcaaccGGCGUCGCGCGCGaacgagUCGGCCGa -3'
miRNA:   3'- -GGCGG-----UCGUAGUGCGCGU------AGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 224115 0.83 0.149966
Target:  5'- cUCGCCGcGCAUCACGCGCGUCuGCCa- -3'
miRNA:   3'- -GGCGGU-CGUAGUGCGCGUAGcCGGcg -5'
14035 5' -59.1 NC_003521.1 + 165662 0.8 0.227829
Target:  5'- gCCGCgCGGCAcCAUGCGUccaggcauccccagGUCGGCCGCc -3'
miRNA:   3'- -GGCG-GUCGUaGUGCGCG--------------UAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 138042 0.79 0.262903
Target:  5'- gCCGCCGGCgccGUCAuCGCGCAgccgCuGCCGCu -3'
miRNA:   3'- -GGCGGUCG---UAGU-GCGCGUa---GcCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 87710 0.79 0.262903
Target:  5'- gCCGCCuGCugccGUCGCGCGCGccCGGCgGCg -3'
miRNA:   3'- -GGCGGuCG----UAGUGCGCGUa-GCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 168970 0.78 0.281093
Target:  5'- cCCGCU-GCuGUCgccgACGCGCGUCGGUCGCg -3'
miRNA:   3'- -GGCGGuCG-UAG----UGCGCGUAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 72281 0.78 0.300268
Target:  5'- cCCGCCAGCGcCGcCGcCGCGcUGGCCGCc -3'
miRNA:   3'- -GGCGGUCGUaGU-GC-GCGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 133377 0.78 0.300268
Target:  5'- uCCGCCGGCA-CA-GCGCggCGGuCCGCg -3'
miRNA:   3'- -GGCGGUCGUaGUgCGCGuaGCC-GGCG- -5'
14035 5' -59.1 NC_003521.1 + 110652 0.77 0.339445
Target:  5'- gCGCCGGCAcggUCACggcccggucggccaGCGCGUCGGUgGCc -3'
miRNA:   3'- gGCGGUCGU---AGUG--------------CGCGUAGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 119645 0.77 0.341606
Target:  5'- aCGCCAGUAcgACGCGC--UGGCCGCc -3'
miRNA:   3'- gGCGGUCGUagUGCGCGuaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 118187 0.77 0.33444
Target:  5'- cCCGCCGGCAaagUCGgggccgccgaGCGCG-CGGCCGCc -3'
miRNA:   3'- -GGCGGUCGU---AGUg---------CGCGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 169428 0.76 0.379084
Target:  5'- gCCGCCucGC-UCACGCggacgacgGCGUCGGCgGCg -3'
miRNA:   3'- -GGCGGu-CGuAGUGCG--------CGUAGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 84210 0.76 0.379084
Target:  5'- gUCGCgCAGCAcCAgGCGCGagaGGCCGCg -3'
miRNA:   3'- -GGCG-GUCGUaGUgCGCGUag-CCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 22188 0.76 0.384546
Target:  5'- gCCGCCGGCcgUggccgcuuaccgccGCGCGCuggCGGCCGa -3'
miRNA:   3'- -GGCGGUCGuaG--------------UGCGCGua-GCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 111101 0.76 0.379084
Target:  5'- gCGCuCGGCGUCgACGgGCcgCGGCCGg -3'
miRNA:   3'- gGCG-GUCGUAG-UGCgCGuaGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 110451 0.76 0.379084
Target:  5'- aUCGCCGGUGgcgcugaGCGCGCAcggcgccugCGGCCGCa -3'
miRNA:   3'- -GGCGGUCGUag-----UGCGCGUa--------GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 225589 0.76 0.386903
Target:  5'- gCGCuCGGCGgccuCGCGC-UCGGCCGCc -3'
miRNA:   3'- gGCG-GUCGUagu-GCGCGuAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 123875 0.76 0.354043
Target:  5'- cCCGCCguucucuccucggaAGCuGUCGCGUGCuGUCGGCgCGCg -3'
miRNA:   3'- -GGCGG--------------UCG-UAGUGCGCG-UAGCCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.