Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14038 | 3' | -54.9 | NC_003521.1 | + | 162287 | 1.09 | 0.006248 |
Target: 5'- gACACAGUCUCAUCACGGGAACGGGGAg -3' miRNA: 3'- -UGUGUCAGAGUAGUGCCCUUGCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 24033 | 0.78 | 0.448527 |
Target: 5'- gACGCGG-CUCcuggcgugAUCACGGGAGgGGGGAa -3' miRNA: 3'- -UGUGUCaGAG--------UAGUGCCCUUgCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 193164 | 0.76 | 0.551523 |
Target: 5'- cGCACAGcaUCUCAggagCcgGCGGGAGCGGcGGAg -3' miRNA: 3'- -UGUGUC--AGAGUa---G--UGCCCUUGCC-CCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 139246 | 0.76 | 0.561296 |
Target: 5'- gUACGGggCUCcUCGCGcGGAGCGGGGGg -3' miRNA: 3'- uGUGUCa-GAGuAGUGC-CCUUGCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 109452 | 0.73 | 0.757516 |
Target: 5'- gGCACGGUCUCGggUAUGGGcGCGucuGGGAa -3' miRNA: 3'- -UGUGUCAGAGUa-GUGCCCuUGC---CCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 168985 | 0.71 | 0.851766 |
Target: 5'- gACGCGcGUCg-GUCGCGGGAGgCGGGcGAc -3' miRNA: 3'- -UGUGU-CAGagUAGUGCCCUU-GCCC-CU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 112307 | 0.7 | 0.858592 |
Target: 5'- uUAUAGUCggcacgaugcCAUCACGGGAcccgacgGCGGGGu -3' miRNA: 3'- uGUGUCAGa---------GUAGUGCCCU-------UGCCCCu -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 177161 | 0.7 | 0.86672 |
Target: 5'- cACACGaagCUCugguUCACGGGcACGGGGu -3' miRNA: 3'- -UGUGUca-GAGu---AGUGCCCuUGCCCCu -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 162885 | 0.7 | 0.873191 |
Target: 5'- -aGCAGggCUUcauguccaucgauAUCACGGGuGACGGGGAc -3' miRNA: 3'- ugUGUCa-GAG-------------UAGUGCCC-UUGCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 10195 | 0.7 | 0.887637 |
Target: 5'- uACACcGUUUUAaugaCACGGGGAgGGGGGa -3' miRNA: 3'- -UGUGuCAGAGUa---GUGCCCUUgCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 155631 | 0.69 | 0.894187 |
Target: 5'- gACGCAGUgUCGUaCGCGaccgagcaaGGGACGGGcGAu -3' miRNA: 3'- -UGUGUCAgAGUA-GUGC---------CCUUGCCC-CU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 212869 | 0.69 | 0.906631 |
Target: 5'- gUAUGGUCgUCGUCguggacGCGGGcGACGGGGGu -3' miRNA: 3'- uGUGUCAG-AGUAG------UGCCC-UUGCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 13472 | 0.69 | 0.918184 |
Target: 5'- aGCGCcGUCgacgGUCugGGcGACGGGGAa -3' miRNA: 3'- -UGUGuCAGag--UAGugCCcUUGCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 138648 | 0.69 | 0.918184 |
Target: 5'- aACGC-GUCgUCAUCAaGGGAgACGGGGc -3' miRNA: 3'- -UGUGuCAG-AGUAGUgCCCU-UGCCCCu -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 187876 | 0.68 | 0.933818 |
Target: 5'- -gGCGGUCaccaccUCGggcggCACGGGcGGCGGGGGc -3' miRNA: 3'- ugUGUCAG------AGUa----GUGCCC-UUGCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 217641 | 0.68 | 0.933818 |
Target: 5'- gGCGUGGUCggggggCAUgGCGGGAucCGGGGGu -3' miRNA: 3'- -UGUGUCAGa-----GUAgUGCCCUu-GCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 170522 | 0.68 | 0.938575 |
Target: 5'- -gACGG-CgUGUgACGGGGACGGGGGg -3' miRNA: 3'- ugUGUCaGaGUAgUGCCCUUGCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 105294 | 0.68 | 0.943108 |
Target: 5'- aGCGCG--UUCAUgGCGGGcgUGGGGAc -3' miRNA: 3'- -UGUGUcaGAGUAgUGCCCuuGCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 71246 | 0.68 | 0.943108 |
Target: 5'- -uGCAGUauuagcaaCGUgACGGaGAACGGGGAg -3' miRNA: 3'- ugUGUCAga------GUAgUGCC-CUUGCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 238358 | 0.68 | 0.943108 |
Target: 5'- gGCGCcGUCgCGUacccauaGCGGGGcGCGGGGAu -3' miRNA: 3'- -UGUGuCAGaGUAg------UGCCCU-UGCCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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