Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14038 | 3' | -54.9 | NC_003521.1 | + | 5621 | 0.66 | 0.978981 |
Target: 5'- cACAUgaGGaUCcCGUCGCGGGAACGGa-- -3' miRNA: 3'- -UGUG--UC-AGaGUAGUGCCCUUGCCccu -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 10195 | 0.7 | 0.887637 |
Target: 5'- uACACcGUUUUAaugaCACGGGGAgGGGGGa -3' miRNA: 3'- -UGUGuCAGAGUa---GUGCCCUUgCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 10453 | 0.67 | 0.962471 |
Target: 5'- gGCACGugcGUUUUcgaacuCGGGGACGGGGAu -3' miRNA: 3'- -UGUGU---CAGAGuagu--GCCCUUGCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 13472 | 0.69 | 0.918184 |
Target: 5'- aGCGCcGUCgacgGUCugGGcGACGGGGAa -3' miRNA: 3'- -UGUGuCAGag--UAGugCCcUUGCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 24033 | 0.78 | 0.448527 |
Target: 5'- gACGCGG-CUCcuggcgugAUCACGGGAGgGGGGAa -3' miRNA: 3'- -UGUGUCaGAG--------UAGUGCCCUUgCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 27853 | 0.67 | 0.962471 |
Target: 5'- cCGCGGUCUCGUaACGGc-ACGGaGGAc -3' miRNA: 3'- uGUGUCAGAGUAgUGCCcuUGCC-CCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 34273 | 0.66 | 0.976694 |
Target: 5'- cUAUcGUCcUGUCACGGGGGCGGGc- -3' miRNA: 3'- uGUGuCAGaGUAGUGCCCUUGCCCcu -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 40806 | 0.67 | 0.965708 |
Target: 5'- gGCGCGGUCagCuauUCGCcucGGGGCGGGGc -3' miRNA: 3'- -UGUGUCAGa-Gu--AGUGc--CCUUGCCCCu -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 43215 | 0.68 | 0.947417 |
Target: 5'- uUACuGUCacgCGUUAcCGGGcAGCGGGGAa -3' miRNA: 3'- uGUGuCAGa--GUAGU-GCCC-UUGCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 69729 | 0.66 | 0.976694 |
Target: 5'- uACGCGGUa-----ACGGcGGGCGGGGAg -3' miRNA: 3'- -UGUGUCAgaguagUGCC-CUUGCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 71246 | 0.68 | 0.943108 |
Target: 5'- -uGCAGUauuagcaaCGUgACGGaGAACGGGGAg -3' miRNA: 3'- ugUGUCAga------GUAgUGCC-CUUGCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 105294 | 0.68 | 0.943108 |
Target: 5'- aGCGCG--UUCAUgGCGGGcgUGGGGAc -3' miRNA: 3'- -UGUGUcaGAGUAgUGCCCuuGCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 109452 | 0.73 | 0.757516 |
Target: 5'- gGCACGGUCUCGggUAUGGGcGCGucuGGGAa -3' miRNA: 3'- -UGUGUCAGAGUa-GUGCCCuUGC---CCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 112307 | 0.7 | 0.858592 |
Target: 5'- uUAUAGUCggcacgaugcCAUCACGGGAcccgacgGCGGGGu -3' miRNA: 3'- uGUGUCAGa---------GUAGUGCCCU-------UGCCCCu -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 131085 | 0.66 | 0.976694 |
Target: 5'- cCGCGG-CUCG-CGCGGGcuccggacGGCGGGGc -3' miRNA: 3'- uGUGUCaGAGUaGUGCCC--------UUGCCCCu -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 138179 | 0.67 | 0.962471 |
Target: 5'- cGCGCcucuGUCUCGauggcCugGGGcAACGGGGu -3' miRNA: 3'- -UGUGu---CAGAGUa----GugCCC-UUGCCCCu -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 138648 | 0.69 | 0.918184 |
Target: 5'- aACGC-GUCgUCAUCAaGGGAgACGGGGc -3' miRNA: 3'- -UGUGuCAG-AGUAGUgCCCU-UGCCCCu -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 139246 | 0.76 | 0.561296 |
Target: 5'- gUACGGggCUCcUCGCGcGGAGCGGGGGg -3' miRNA: 3'- uGUGUCa-GAGuAGUGC-CCUUGCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 149683 | 0.67 | 0.96379 |
Target: 5'- cCACGGUaacugaucgcgagUAUUACGGGAugcCGGGGAa -3' miRNA: 3'- uGUGUCAga-----------GUAGUGCCCUu--GCCCCU- -5' |
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14038 | 3' | -54.9 | NC_003521.1 | + | 155631 | 0.69 | 0.894187 |
Target: 5'- gACGCAGUgUCGUaCGCGaccgagcaaGGGACGGGcGAu -3' miRNA: 3'- -UGUGUCAgAGUA-GUGC---------CCUUGCCC-CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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