miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14038 3' -54.9 NC_003521.1 + 204643 0.66 0.978981
Target:  5'- cACACGGgggUUUAuUCACaGGGGAaGGGGAa -3'
miRNA:   3'- -UGUGUCa--GAGU-AGUG-CCCUUgCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 10453 0.67 0.962471
Target:  5'- gGCACGugcGUUUUcgaacuCGGGGACGGGGAu -3'
miRNA:   3'- -UGUGU---CAGAGuagu--GCCCUUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 27853 0.67 0.962471
Target:  5'- cCGCGGUCUCGUaACGGc-ACGGaGGAc -3'
miRNA:   3'- uGUGUCAGAGUAgUGCCcuUGCC-CCU- -5'
14038 3' -54.9 NC_003521.1 + 138179 0.67 0.962471
Target:  5'- cGCGCcucuGUCUCGauggcCugGGGcAACGGGGu -3'
miRNA:   3'- -UGUGu---CAGAGUa----GugCCC-UUGCCCCu -5'
14038 3' -54.9 NC_003521.1 + 40806 0.67 0.965708
Target:  5'- gGCGCGGUCagCuauUCGCcucGGGGCGGGGc -3'
miRNA:   3'- -UGUGUCAGa-Gu--AGUGc--CCUUGCCCCu -5'
14038 3' -54.9 NC_003521.1 + 217838 0.66 0.971581
Target:  5'- -gAguGUgUCGUCucuCGGGGGgGGGGGg -3'
miRNA:   3'- ugUguCAgAGUAGu--GCCCUUgCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 164784 0.66 0.97423
Target:  5'- gACGCGG-Cggg-CACGGGucguCGGGGAc -3'
miRNA:   3'- -UGUGUCaGaguaGUGCCCuu--GCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 229399 0.66 0.976694
Target:  5'- gACACGG----GUgGCGGGuACGGGGAc -3'
miRNA:   3'- -UGUGUCagagUAgUGCCCuUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 131085 0.66 0.976694
Target:  5'- cCGCGG-CUCG-CGCGGGcuccggacGGCGGGGc -3'
miRNA:   3'- uGUGUCaGAGUaGUGCCC--------UUGCCCCu -5'
14038 3' -54.9 NC_003521.1 + 235825 0.67 0.953078
Target:  5'- aGCGCGucagcGUCUgA-CGCGGGAuggugaggacaccacACGGGGAg -3'
miRNA:   3'- -UGUGU-----CAGAgUaGUGCCCU---------------UGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 238358 0.68 0.943108
Target:  5'- gGCGCcGUCgCGUacccauaGCGGGGcGCGGGGAu -3'
miRNA:   3'- -UGUGuCAGaGUAg------UGCCCU-UGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 170522 0.68 0.938575
Target:  5'- -gACGG-CgUGUgACGGGGACGGGGGg -3'
miRNA:   3'- ugUGUCaGaGUAgUGCCCUUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 168985 0.71 0.851766
Target:  5'- gACGCGcGUCg-GUCGCGGGAGgCGGGcGAc -3'
miRNA:   3'- -UGUGU-CAGagUAGUGCCCUU-GCCC-CU- -5'
14038 3' -54.9 NC_003521.1 + 112307 0.7 0.858592
Target:  5'- uUAUAGUCggcacgaugcCAUCACGGGAcccgacgGCGGGGu -3'
miRNA:   3'- uGUGUCAGa---------GUAGUGCCCU-------UGCCCCu -5'
14038 3' -54.9 NC_003521.1 + 162885 0.7 0.873191
Target:  5'- -aGCAGggCUUcauguccaucgauAUCACGGGuGACGGGGAc -3'
miRNA:   3'- ugUGUCa-GAG-------------UAGUGCCC-UUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 10195 0.7 0.887637
Target:  5'- uACACcGUUUUAaugaCACGGGGAgGGGGGa -3'
miRNA:   3'- -UGUGuCAGAGUa---GUGCCCUUgCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 212869 0.69 0.906631
Target:  5'- gUAUGGUCgUCGUCguggacGCGGGcGACGGGGGu -3'
miRNA:   3'- uGUGUCAG-AGUAG------UGCCC-UUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 138648 0.69 0.918184
Target:  5'- aACGC-GUCgUCAUCAaGGGAgACGGGGc -3'
miRNA:   3'- -UGUGuCAG-AGUAGUgCCCU-UGCCCCu -5'
14038 3' -54.9 NC_003521.1 + 217641 0.68 0.933818
Target:  5'- gGCGUGGUCggggggCAUgGCGGGAucCGGGGGu -3'
miRNA:   3'- -UGUGUCAGa-----GUAgUGCCCUu-GCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 187876 0.68 0.933818
Target:  5'- -gGCGGUCaccaccUCGggcggCACGGGcGGCGGGGGc -3'
miRNA:   3'- ugUGUCAG------AGUa----GUGCCC-UUGCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.