miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14038 5' -58.8 NC_003521.1 + 162323 1.07 0.003079
Target:  5'- gAUUCCCUACUACCCGCAGGCGGCGACu -3'
miRNA:   3'- -UAAGGGAUGAUGGGCGUCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 19178 0.79 0.222358
Target:  5'- --gCCUgGCUACaCCGCGGGCGGCGAg -3'
miRNA:   3'- uaaGGGaUGAUG-GGCGUCCGCCGCUg -5'
14038 5' -58.8 NC_003521.1 + 120922 0.78 0.249941
Target:  5'- cGUUUgCgGCUGCCCGC-GGCGGCGGCu -3'
miRNA:   3'- -UAAGgGaUGAUGGGCGuCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 43419 0.77 0.313491
Target:  5'- -cUUCCUACUgcguGCCCGacgaggAGGCGGCGGCg -3'
miRNA:   3'- uaAGGGAUGA----UGGGCg-----UCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 191069 0.77 0.313491
Target:  5'- uGUUCCCgcgGCgACCgUGguGGCGGCGGCg -3'
miRNA:   3'- -UAAGGGa--UGaUGG-GCguCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 82828 0.74 0.438905
Target:  5'- --aCgCUAUUACacaaaucgCCGCGGGCGGCGGCg -3'
miRNA:   3'- uaaGgGAUGAUG--------GGCGUCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 146504 0.74 0.438905
Target:  5'- -aUCCCUcgGCcgACCCGCAGaaaCGGCGGCu -3'
miRNA:   3'- uaAGGGA--UGa-UGGGCGUCc--GCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 135737 0.74 0.447656
Target:  5'- --gCCgCUGCUACUgCGguGGUGGCGGCg -3'
miRNA:   3'- uaaGG-GAUGAUGG-GCguCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 49894 0.74 0.451183
Target:  5'- --cCCCUACgucGCCCGCuacguaagaaaggagAGGgGGCGGCa -3'
miRNA:   3'- uaaGGGAUGa--UGGGCG---------------UCCgCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 59515 0.73 0.456502
Target:  5'- --gCCCUG--GCCCGCGGGCGGCc-- -3'
miRNA:   3'- uaaGGGAUgaUGGGCGUCCGCCGcug -5'
14038 5' -58.8 NC_003521.1 + 104148 0.73 0.465442
Target:  5'- --gCCCUGCUcgguGCuCUGC-GGCGGCGGCg -3'
miRNA:   3'- uaaGGGAUGA----UG-GGCGuCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 135216 0.73 0.473564
Target:  5'- --gCCCUGCUGCagcgccugagcggCUGCGccGGCGGCGGCg -3'
miRNA:   3'- uaaGGGAUGAUG-------------GGCGU--CCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 14474 0.73 0.474471
Target:  5'- -cUCCCgcggcGCUACCCGCGgGGCGcGCGcACc -3'
miRNA:   3'- uaAGGGa----UGAUGGGCGU-CCGC-CGC-UG- -5'
14038 5' -58.8 NC_003521.1 + 144048 0.73 0.483587
Target:  5'- --gCCgCUGCUGCCgGCGGcGaCGGCGACc -3'
miRNA:   3'- uaaGG-GAUGAUGGgCGUC-C-GCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 196985 0.72 0.530341
Target:  5'- --gCCUgugACggGCCCGCGgccGGCGGCGGCu -3'
miRNA:   3'- uaaGGGa--UGa-UGGGCGU---CCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 189 0.72 0.539898
Target:  5'- -cUCCCUGCacGCCCGC-GGCaaGCGACa -3'
miRNA:   3'- uaAGGGAUGa-UGGGCGuCCGc-CGCUG- -5'
14038 5' -58.8 NC_003521.1 + 240738 0.72 0.539898
Target:  5'- -cUCCCUGCacGCCCGC-GGCaaGCGACa -3'
miRNA:   3'- uaAGGGAUGa-UGGGCGuCCGc-CGCUG- -5'
14038 5' -58.8 NC_003521.1 + 200417 0.72 0.539898
Target:  5'- -cUCCCUGCacGCCCGC-GGCaaGCGACa -3'
miRNA:   3'- uaAGGGAUGa-UGGGCGuCCGc-CGCUG- -5'
14038 5' -58.8 NC_003521.1 + 128028 0.72 0.549511
Target:  5'- -gUCCCagagcGCgUGCCCGUAGGCGGCcagcaGGCa -3'
miRNA:   3'- uaAGGGa----UG-AUGGGCGUCCGCCG-----CUG- -5'
14038 5' -58.8 NC_003521.1 + 79223 0.71 0.617956
Target:  5'- --gCCCgaggGCaccagaUGCCCGCGGuagcGCGGCGACa -3'
miRNA:   3'- uaaGGGa---UG------AUGGGCGUC----CGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.