miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14038 5' -58.8 NC_003521.1 + 218665 0.68 0.762866
Target:  5'- -gUCCCU-CUcCaCCGUcucccgguaagaGGGCGGCGGCg -3'
miRNA:   3'- uaAGGGAuGAuG-GGCG------------UCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 18713 0.69 0.70627
Target:  5'- -aUCCggcugugGCUG-CCGCuGGCGGCGGCg -3'
miRNA:   3'- uaAGGga-----UGAUgGGCGuCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 125200 0.69 0.70627
Target:  5'- -cUCCaugGCcGCCaUGguGGCGGCGGCa -3'
miRNA:   3'- uaAGGga-UGaUGG-GCguCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 131023 0.69 0.715897
Target:  5'- --gCCCUcCUccacguCCCGUcuccuGGGCGGCGGCg -3'
miRNA:   3'- uaaGGGAuGAu-----GGGCG-----UCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 129988 0.69 0.715897
Target:  5'- -gUCgCUGCcGCUgCGCcGGCGGCGGCg -3'
miRNA:   3'- uaAGgGAUGaUGG-GCGuCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 29234 0.69 0.734942
Target:  5'- -aUCCuCUACUggGCCUcCAGccGCGGCGACg -3'
miRNA:   3'- uaAGG-GAUGA--UGGGcGUC--CGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 118913 0.68 0.744344
Target:  5'- --gCCCU-CgucgGCgCCGCggcguGGGCGGCGGCg -3'
miRNA:   3'- uaaGGGAuGa---UG-GGCG-----UCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 111938 0.68 0.762866
Target:  5'- --gCCCUcgACUACCUGgc-GCGGCGGCa -3'
miRNA:   3'- uaaGGGA--UGAUGGGCgucCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 122213 0.68 0.762866
Target:  5'- -cUCCaUGCUGCCugcgagCGCGGGUgccGGCGACu -3'
miRNA:   3'- uaAGGgAUGAUGG------GCGUCCG---CCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 29529 0.7 0.677072
Target:  5'- -aUCUCUGuCUACCCcgcauGCAGGC-GCGACc -3'
miRNA:   3'- uaAGGGAU-GAUGGG-----CGUCCGcCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 164813 0.7 0.667261
Target:  5'- -aUCCCggaGC-GCCCGCGGGggaggaggaacCGGCGGCc -3'
miRNA:   3'- uaAGGGa--UGaUGGGCGUCC-----------GCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 150379 0.7 0.667261
Target:  5'- -gUCgaCUGCUACUgGCGaaagcuuuucGGCGGCGACg -3'
miRNA:   3'- uaAGg-GAUGAUGGgCGU----------CCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 43419 0.77 0.313491
Target:  5'- -cUUCCUACUgcguGCCCGacgaggAGGCGGCGGCg -3'
miRNA:   3'- uaAGGGAUGA----UGGGCg-----UCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 191069 0.77 0.313491
Target:  5'- uGUUCCCgcgGCgACCgUGguGGCGGCGGCg -3'
miRNA:   3'- -UAAGGGa--UGaUGG-GCguCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 146504 0.74 0.438905
Target:  5'- -aUCCCUcgGCcgACCCGCAGaaaCGGCGGCu -3'
miRNA:   3'- uaAGGGA--UGa-UGGGCGUCc--GCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 200417 0.72 0.539898
Target:  5'- -cUCCCUGCacGCCCGC-GGCaaGCGACa -3'
miRNA:   3'- uaAGGGAUGa-UGGGCGuCCGc-CGCUG- -5'
14038 5' -58.8 NC_003521.1 + 79223 0.71 0.617956
Target:  5'- --gCCCgaggGCaccagaUGCCCGCGGuagcGCGGCGACa -3'
miRNA:   3'- uaaGGGa---UG------AUGGGCGUC----CGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 150684 0.7 0.627825
Target:  5'- --gCCgCUGCUGCUgggugcugcugCGCcGGCGGCGACu -3'
miRNA:   3'- uaaGG-GAUGAUGG-----------GCGuCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 36043 0.7 0.63671
Target:  5'- --gCCCU-CUucgccguaaGCCCGCcgccgacacaacaGGGCGGCGGCg -3'
miRNA:   3'- uaaGGGAuGA---------UGGGCG-------------UCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 238674 0.7 0.647566
Target:  5'- -gUUgCUGCUGCUggaGCAGGuCGGCGGCc -3'
miRNA:   3'- uaAGgGAUGAUGGg--CGUCC-GCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.