miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14038 5' -58.8 NC_003521.1 + 189 0.72 0.539898
Target:  5'- -cUCCCUGCacGCCCGC-GGCaaGCGACa -3'
miRNA:   3'- uaAGGGAUGa-UGGGCGuCCGc-CGCUG- -5'
14038 5' -58.8 NC_003521.1 + 6395 0.67 0.831998
Target:  5'- --gCCgCaGCUA-CCGC-GGCGGCGACg -3'
miRNA:   3'- uaaGG-GaUGAUgGGCGuCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 13973 0.7 0.667261
Target:  5'- --gCCCUGauggGCCUGCccGGcGCGGCGGCg -3'
miRNA:   3'- uaaGGGAUga--UGGGCG--UC-CGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 14249 0.69 0.70627
Target:  5'- --aUCCUGCUGCCCGauccGCGGCG-Cg -3'
miRNA:   3'- uaaGGGAUGAUGGGCguc-CGCCGCuG- -5'
14038 5' -58.8 NC_003521.1 + 14474 0.73 0.474471
Target:  5'- -cUCCCgcggcGCUACCCGCGgGGCGcGCGcACc -3'
miRNA:   3'- uaAGGGa----UGAUGGGCGU-CCGC-CGC-UG- -5'
14038 5' -58.8 NC_003521.1 + 16280 0.66 0.869963
Target:  5'- -gUUCCUGCUggGCgCCGUGGGUgccuaccggcccGGCGGCu -3'
miRNA:   3'- uaAGGGAUGA--UG-GGCGUCCG------------CCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 18713 0.69 0.70627
Target:  5'- -aUCCggcugugGCUG-CCGCuGGCGGCGGCg -3'
miRNA:   3'- uaAGGga-----UGAUgGGCGuCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 19178 0.79 0.222358
Target:  5'- --gCCUgGCUACaCCGCGGGCGGCGAg -3'
miRNA:   3'- uaaGGGaUGAUG-GGCGUCCGCCGCUg -5'
14038 5' -58.8 NC_003521.1 + 19726 0.66 0.869963
Target:  5'- --aCgCUGCUgACCaGCGuGGCGGUGACg -3'
miRNA:   3'- uaaGgGAUGA-UGGgCGU-CCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 25530 0.66 0.862745
Target:  5'- ---aCCUGCcg-CCGCuGGCGGUGGCc -3'
miRNA:   3'- uaagGGAUGaugGGCGuCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 27185 0.68 0.7518
Target:  5'- --aCCCUGCUcugguguuucauCCUGCuGcGCGGCGACc -3'
miRNA:   3'- uaaGGGAUGAu-----------GGGCGuC-CGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 29234 0.69 0.734942
Target:  5'- -aUCCuCUACUggGCCUcCAGccGCGGCGACg -3'
miRNA:   3'- uaAGG-GAUGA--UGGGcGUC--CGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 29529 0.7 0.677072
Target:  5'- -aUCUCUGuCUACCCcgcauGCAGGC-GCGACc -3'
miRNA:   3'- uaAGGGAU-GAUGGG-----CGUCCGcCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 29736 0.66 0.869963
Target:  5'- -aUCCCUccaguccCCCGcCGGGCaacGGCGACa -3'
miRNA:   3'- uaAGGGAugau---GGGC-GUCCG---CCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 36043 0.7 0.63671
Target:  5'- --gCCCU-CUucgccguaaGCCCGCcgccgacacaacaGGGCGGCGGCg -3'
miRNA:   3'- uaaGGGAuGA---------UGGGCG-------------UCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 38447 0.7 0.647566
Target:  5'- -gUUgCUGCUGCUggaGCAGGuCGGCGGCc -3'
miRNA:   3'- uaAGgGAUGAUGGg--CGUCC-GCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 39428 0.67 0.815584
Target:  5'- -gUCCagu---CCCGUAGGCGGCGcCg -3'
miRNA:   3'- uaAGGgaugauGGGCGUCCGCCGCuG- -5'
14038 5' -58.8 NC_003521.1 + 43419 0.77 0.313491
Target:  5'- -cUUCCUACUgcguGCCCGacgaggAGGCGGCGGCg -3'
miRNA:   3'- uaAGGGAUGA----UGGGCg-----UCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 49894 0.74 0.451183
Target:  5'- --cCCCUACgucGCCCGCuacguaagaaaggagAGGgGGCGGCa -3'
miRNA:   3'- uaaGGGAUGa--UGGGCG---------------UCCgCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 52944 0.69 0.734942
Target:  5'- --gCCCgUGCcGCCCG-AGGUGGUGACc -3'
miRNA:   3'- uaaGGG-AUGaUGGGCgUCCGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.