miRNA display CGI


Results 21 - 40 of 235 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14063 3' -61.5 NC_003521.1 + 13224 0.73 0.395292
Target:  5'- cGACCGGCGCCcaaGCCUGC-CaUGCCUc -3'
miRNA:   3'- -CUGGUCGUGGag-CGGACGcGcACGGG- -5'
14063 3' -61.5 NC_003521.1 + 117970 0.73 0.403299
Target:  5'- cGGCCAGCACCagCGCuacgacgagCUGCGCGacGCCa -3'
miRNA:   3'- -CUGGUCGUGGa-GCG---------GACGCGCa-CGGg -5'
14063 3' -61.5 NC_003521.1 + 148832 0.72 0.411408
Target:  5'- cGCCuGC-CCUCgGCCgagGUGCGUGCCg -3'
miRNA:   3'- cUGGuCGuGGAG-CGGa--CGCGCACGGg -5'
14063 3' -61.5 NC_003521.1 + 157985 0.72 0.411408
Target:  5'- aGGCUugGGCACCUCcaCCUGUGCcgcccgGUGCCCu -3'
miRNA:   3'- -CUGG--UCGUGGAGc-GGACGCG------CACGGG- -5'
14063 3' -61.5 NC_003521.1 + 45421 0.72 0.411408
Target:  5'- aGCCGGUGCC-CGCCgucgGCGCGgucaugGCCUc -3'
miRNA:   3'- cUGGUCGUGGaGCGGa---CGCGCa-----CGGG- -5'
14063 3' -61.5 NC_003521.1 + 87258 0.72 0.411408
Target:  5'- gGAgCGGCugUgCGCCgUGCGCGUGgCCa -3'
miRNA:   3'- -CUgGUCGugGaGCGG-ACGCGCACgGG- -5'
14063 3' -61.5 NC_003521.1 + 155217 0.72 0.417144
Target:  5'- gGACgAGCACgUCGCCUacguggaccgcuucGUGCG-GCCCc -3'
miRNA:   3'- -CUGgUCGUGgAGCGGA--------------CGCGCaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 111768 0.72 0.418792
Target:  5'- cGCCAGCucagggcgcCCUCGUggacuuugaguuuCUGCGgGUGCCCu -3'
miRNA:   3'- cUGGUCGu--------GGAGCG-------------GACGCgCACGGG- -5'
14063 3' -61.5 NC_003521.1 + 74605 0.72 0.418792
Target:  5'- cGGCCGGCgcGCCUCGCCgccGCGCcaacagcggggugGUGCgCg -3'
miRNA:   3'- -CUGGUCG--UGGAGCGGa--CGCG-------------CACGgG- -5'
14063 3' -61.5 NC_003521.1 + 176602 0.72 0.419617
Target:  5'- gGAUgAGCAcguCCUCGCgCUGCuGCGUGgCCa -3'
miRNA:   3'- -CUGgUCGU---GGAGCG-GACG-CGCACgGG- -5'
14063 3' -61.5 NC_003521.1 + 123580 0.72 0.427925
Target:  5'- cGugCAGCGCC--GCgUGaUGCGUGCCCu -3'
miRNA:   3'- -CugGUCGUGGagCGgAC-GCGCACGGG- -5'
14063 3' -61.5 NC_003521.1 + 110635 0.72 0.439718
Target:  5'- cAUCGGCAUCUCGCCggGCGCcggcacggucacgGCCCg -3'
miRNA:   3'- cUGGUCGUGGAGCGGa-CGCGca-----------CGGG- -5'
14063 3' -61.5 NC_003521.1 + 126775 0.72 0.444828
Target:  5'- -uCCGGCAggcCCUgGCgCUGCGCGUGgUCCa -3'
miRNA:   3'- cuGGUCGU---GGAgCG-GACGCGCAC-GGG- -5'
14063 3' -61.5 NC_003521.1 + 156611 0.72 0.444828
Target:  5'- cGGCCucucGCGCCUgGUgCUGCGCGacGCCCu -3'
miRNA:   3'- -CUGGu---CGUGGAgCG-GACGCGCa-CGGG- -5'
14063 3' -61.5 NC_003521.1 + 137320 0.72 0.452556
Target:  5'- cGCCuGCugCugggcucgcccuuUCGCCaGCGCGUGCCg -3'
miRNA:   3'- cUGGuCGugG-------------AGCGGaCGCGCACGGg -5'
14063 3' -61.5 NC_003521.1 + 137749 0.72 0.453419
Target:  5'- -cCCAGCAgcagcCCUCGCCcGCGCacccGCCCu -3'
miRNA:   3'- cuGGUCGU-----GGAGCGGaCGCGca--CGGG- -5'
14063 3' -61.5 NC_003521.1 + 86323 0.72 0.45688
Target:  5'- cGCCAGCACCUggaugcuggaggucuUGCCgGCGCcggcgGUGCCg -3'
miRNA:   3'- cUGGUCGUGGA---------------GCGGaCGCG-----CACGGg -5'
14063 3' -61.5 NC_003521.1 + 95806 0.71 0.462098
Target:  5'- cGACCAGCGCgUCGgCgaugucgGCGCGcgagGCCUc -3'
miRNA:   3'- -CUGGUCGUGgAGCgGa------CGCGCa---CGGG- -5'
14063 3' -61.5 NC_003521.1 + 201301 0.71 0.470865
Target:  5'- cGCCAGC-UCUCGCC-GCGCGacCCCu -3'
miRNA:   3'- cUGGUCGuGGAGCGGaCGCGCacGGG- -5'
14063 3' -61.5 NC_003521.1 + 1073 0.71 0.470865
Target:  5'- cGCCAGC-UCUCGCC-GCGCGacCCCu -3'
miRNA:   3'- cUGGUCGuGGAGCGGaCGCGCacGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.