miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14063 3' -61.5 NC_003521.1 + 149490 1.1 0.001259
Target:  5'- cGACCAGCACCUCGCCUGCGCGUGCCCc -3'
miRNA:   3'- -CUGGUCGUGGAGCGGACGCGCACGGG- -5'
14063 3' -61.5 NC_003521.1 + 74549 0.83 0.092281
Target:  5'- gGACCAGC-Cg-CGCCgUGCGCGUGCCCg -3'
miRNA:   3'- -CUGGUCGuGgaGCGG-ACGCGCACGGG- -5'
14063 3' -61.5 NC_003521.1 + 35001 0.81 0.124112
Target:  5'- gGGCCAGCGag-CGCUUGCGuCGUGCCCg -3'
miRNA:   3'- -CUGGUCGUggaGCGGACGC-GCACGGG- -5'
14063 3' -61.5 NC_003521.1 + 73956 0.79 0.173963
Target:  5'- aGACCAGCACCgugUGCCUGCuguGCGaGCUCa -3'
miRNA:   3'- -CUGGUCGUGGa--GCGGACG---CGCaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 218461 0.78 0.186749
Target:  5'- uGGCCGGCACCaCGCCguggGCGCaGUGgCCCc -3'
miRNA:   3'- -CUGGUCGUGGaGCGGa---CGCG-CAC-GGG- -5'
14063 3' -61.5 NC_003521.1 + 156178 0.78 0.191192
Target:  5'- uGugCGGCAUCUCGCCggugGCGCGUcaggaaGCCUa -3'
miRNA:   3'- -CugGUCGUGGAGCGGa---CGCGCA------CGGG- -5'
14063 3' -61.5 NC_003521.1 + 24597 0.76 0.263632
Target:  5'- cGCUcGUagGCCUCGUCUGCGUGUGCCa -3'
miRNA:   3'- cUGGuCG--UGGAGCGGACGCGCACGGg -5'
14063 3' -61.5 NC_003521.1 + 74175 0.76 0.26958
Target:  5'- uGGCCGacuGCGCCgcggCGCCcgGCGCGcgGCCCg -3'
miRNA:   3'- -CUGGU---CGUGGa---GCGGa-CGCGCa-CGGG- -5'
14063 3' -61.5 NC_003521.1 + 226051 0.75 0.276246
Target:  5'- cACCAGCACCUCgGCCacgaagGCGCGccccggccgcggccgGCCCg -3'
miRNA:   3'- cUGGUCGUGGAG-CGGa-----CGCGCa--------------CGGG- -5'
14063 3' -61.5 NC_003521.1 + 139682 0.75 0.281798
Target:  5'- aGACC-GCGCCgCGCUUucCGCGUGCCCg -3'
miRNA:   3'- -CUGGuCGUGGaGCGGAc-GCGCACGGG- -5'
14063 3' -61.5 NC_003521.1 + 196055 0.75 0.307544
Target:  5'- gGGCCAGCACCggcCGCCUucCGCG-GUCCg -3'
miRNA:   3'- -CUGGUCGUGGa--GCGGAc-GCGCaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 145668 0.74 0.335049
Target:  5'- cGGCCGGCcgacuCCUUGCCgucgGCGCG-GCCg -3'
miRNA:   3'- -CUGGUCGu----GGAGCGGa---CGCGCaCGGg -5'
14063 3' -61.5 NC_003521.1 + 95171 0.74 0.335049
Target:  5'- gGGCCgagGGCACCUCGCgCUcgGCGCGgaacuccacGCCCg -3'
miRNA:   3'- -CUGG---UCGUGGAGCG-GA--CGCGCa--------CGGG- -5'
14063 3' -61.5 NC_003521.1 + 193383 0.74 0.342201
Target:  5'- aGugCGGCGCC-CGgCUGCaUGUGCCCu -3'
miRNA:   3'- -CugGUCGUGGaGCgGACGcGCACGGG- -5'
14063 3' -61.5 NC_003521.1 + 12748 0.74 0.347272
Target:  5'- -uCCGGCGCCUCGgacgugagcugggaCCcGCGCGUGCgCCc -3'
miRNA:   3'- cuGGUCGUGGAGC--------------GGaCGCGCACG-GG- -5'
14063 3' -61.5 NC_003521.1 + 94943 0.74 0.349462
Target:  5'- cGCCGGCgGCCUCGUCgucgGCGCc-GCCCg -3'
miRNA:   3'- cUGGUCG-UGGAGCGGa---CGCGcaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 113270 0.73 0.356832
Target:  5'- cGCCgAGCACCUgGCCgacgGCGUGcUGCCg -3'
miRNA:   3'- cUGG-UCGUGGAgCGGa---CGCGC-ACGGg -5'
14063 3' -61.5 NC_003521.1 + 61611 0.73 0.366575
Target:  5'- gGGCgCAGCGCUccaacggacgggugaUCGCCUcucuagaGCGCGUGCUCa -3'
miRNA:   3'- -CUG-GUCGUGG---------------AGCGGA-------CGCGCACGGG- -5'
14063 3' -61.5 NC_003521.1 + 170531 0.73 0.368849
Target:  5'- cGACCuGCACCgcuuucucuucggCGCCgaccUGCGCcUGCCCg -3'
miRNA:   3'- -CUGGuCGUGGa------------GCGG----ACGCGcACGGG- -5'
14063 3' -61.5 NC_003521.1 + 153177 0.73 0.387389
Target:  5'- gGGCU-GCGCCUCcaGCCUGUGCGagGCCUg -3'
miRNA:   3'- -CUGGuCGUGGAG--CGGACGCGCa-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.