miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14063 3' -61.5 NC_003521.1 + 28817 0.71 0.497654
Target:  5'- cGGCCAGUACCUgGCgUGUcuGCGgcGCCUg -3'
miRNA:   3'- -CUGGUCGUGGAgCGgACG--CGCa-CGGG- -5'
14063 3' -61.5 NC_003521.1 + 123580 0.72 0.427925
Target:  5'- cGugCAGCGCC--GCgUGaUGCGUGCCCu -3'
miRNA:   3'- -CugGUCGUGGagCGgAC-GCGCACGGG- -5'
14063 3' -61.5 NC_003521.1 + 110635 0.72 0.439718
Target:  5'- cAUCGGCAUCUCGCCggGCGCcggcacggucacgGCCCg -3'
miRNA:   3'- cUGGUCGUGGAGCGGa-CGCGca-----------CGGG- -5'
14063 3' -61.5 NC_003521.1 + 126775 0.72 0.444828
Target:  5'- -uCCGGCAggcCCUgGCgCUGCGCGUGgUCCa -3'
miRNA:   3'- cuGGUCGU---GGAgCG-GACGCGCAC-GGG- -5'
14063 3' -61.5 NC_003521.1 + 156611 0.72 0.444828
Target:  5'- cGGCCucucGCGCCUgGUgCUGCGCGacGCCCu -3'
miRNA:   3'- -CUGGu---CGUGGAgCG-GACGCGCa-CGGG- -5'
14063 3' -61.5 NC_003521.1 + 201301 0.71 0.470865
Target:  5'- cGCCAGC-UCUCGCC-GCGCGacCCCu -3'
miRNA:   3'- cUGGUCGuGGAGCGGaCGCGCacGGG- -5'
14063 3' -61.5 NC_003521.1 + 134396 0.71 0.479715
Target:  5'- cGGCCAGCGCCUUGU---CGUG-GCCCa -3'
miRNA:   3'- -CUGGUCGUGGAGCGgacGCGCaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 238303 0.71 0.479715
Target:  5'- gGGCCAGUACCUCGgauUCUcCGCGU-CCCg -3'
miRNA:   3'- -CUGGUCGUGGAGC---GGAcGCGCAcGGG- -5'
14063 3' -61.5 NC_003521.1 + 206876 0.71 0.488646
Target:  5'- -uCCAGCugCUCGCC-GCGCacGCCg -3'
miRNA:   3'- cuGGUCGugGAGCGGaCGCGcaCGGg -5'
14063 3' -61.5 NC_003521.1 + 74605 0.72 0.418792
Target:  5'- cGGCCGGCgcGCCUCGCCgccGCGCcaacagcggggugGUGCgCg -3'
miRNA:   3'- -CUGGUCG--UGGAGCGGa--CGCG-------------CACGgG- -5'
14063 3' -61.5 NC_003521.1 + 111768 0.72 0.418792
Target:  5'- cGCCAGCucagggcgcCCUCGUggacuuugaguuuCUGCGgGUGCCCu -3'
miRNA:   3'- cUGGUCGu--------GGAGCG-------------GACGCgCACGGG- -5'
14063 3' -61.5 NC_003521.1 + 155217 0.72 0.417144
Target:  5'- gGACgAGCACgUCGCCUacguggaccgcuucGUGCG-GCCCc -3'
miRNA:   3'- -CUGgUCGUGgAGCGGA--------------CGCGCaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 73956 0.79 0.173963
Target:  5'- aGACCAGCACCgugUGCCUGCuguGCGaGCUCa -3'
miRNA:   3'- -CUGGUCGUGGa--GCGGACG---CGCaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 218461 0.78 0.186749
Target:  5'- uGGCCGGCACCaCGCCguggGCGCaGUGgCCCc -3'
miRNA:   3'- -CUGGUCGUGGaGCGGa---CGCG-CAC-GGG- -5'
14063 3' -61.5 NC_003521.1 + 74175 0.76 0.26958
Target:  5'- uGGCCGacuGCGCCgcggCGCCcgGCGCGcgGCCCg -3'
miRNA:   3'- -CUGGU---CGUGGa---GCGGa-CGCGCa-CGGG- -5'
14063 3' -61.5 NC_003521.1 + 226051 0.75 0.276246
Target:  5'- cACCAGCACCUCgGCCacgaagGCGCGccccggccgcggccgGCCCg -3'
miRNA:   3'- cUGGUCGUGGAG-CGGa-----CGCGCa--------------CGGG- -5'
14063 3' -61.5 NC_003521.1 + 196055 0.75 0.307544
Target:  5'- gGGCCAGCACCggcCGCCUucCGCG-GUCCg -3'
miRNA:   3'- -CUGGUCGUGGa--GCGGAc-GCGCaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 61611 0.73 0.366575
Target:  5'- gGGCgCAGCGCUccaacggacgggugaUCGCCUcucuagaGCGCGUGCUCa -3'
miRNA:   3'- -CUG-GUCGUGG---------------AGCGGA-------CGCGCACGGG- -5'
14063 3' -61.5 NC_003521.1 + 117970 0.73 0.403299
Target:  5'- cGGCCAGCACCagCGCuacgacgagCUGCGCGacGCCa -3'
miRNA:   3'- -CUGGUCGUGGa-GCG---------GACGCGCa-CGGg -5'
14063 3' -61.5 NC_003521.1 + 148832 0.72 0.411408
Target:  5'- cGCCuGC-CCUCgGCCgagGUGCGUGCCg -3'
miRNA:   3'- cUGGuCGuGGAG-CGGa--CGCGCACGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.