miRNA display CGI


Results 1 - 20 of 235 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14063 3' -61.5 NC_003521.1 + 126926 0.66 0.76917
Target:  5'- cGCuCAGCAgCUCGCCuaccugcUGuCGCuGUGCCg -3'
miRNA:   3'- cUG-GUCGUgGAGCGG-------AC-GCG-CACGGg -5'
14063 3' -61.5 NC_003521.1 + 204033 0.66 0.778839
Target:  5'- cGCgAGCGgCUcCGCa-GCGCGUgGCCCu -3'
miRNA:   3'- cUGgUCGUgGA-GCGgaCGCGCA-CGGG- -5'
14063 3' -61.5 NC_003521.1 + 221935 0.66 0.787508
Target:  5'- uGCCgcGGCGCCUCGuCCUcGuCGC-UGCUCa -3'
miRNA:   3'- cUGG--UCGUGGAGC-GGA-C-GCGcACGGG- -5'
14063 3' -61.5 NC_003521.1 + 78230 0.66 0.778839
Target:  5'- cGACgGGCACCUUGCagaaGCGCugcacGUCCa -3'
miRNA:   3'- -CUGgUCGUGGAGCGga--CGCGca---CGGG- -5'
14063 3' -61.5 NC_003521.1 + 234127 0.66 0.787508
Target:  5'- aGAcCCAGCAgCgCUCGCggGCGCaG-GCCCu -3'
miRNA:   3'- -CU-GGUCGU-G-GAGCGgaCGCG-CaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 32008 0.66 0.770054
Target:  5'- uGCaCAGCugC-CGCagguaauuggUGCGCGUGCCg -3'
miRNA:   3'- cUG-GUCGugGaGCGg---------ACGCGCACGGg -5'
14063 3' -61.5 NC_003521.1 + 33424 0.66 0.770054
Target:  5'- -cCCAGCAcguagaccuuguCCUCGCCcgGCagguaggcgaagGCGUgGCCCu -3'
miRNA:   3'- cuGGUCGU------------GGAGCGGa-CG------------CGCA-CGGG- -5'
14063 3' -61.5 NC_003521.1 + 40803 0.66 0.778839
Target:  5'- -cCCGGCGCggucagcuaUUCGCCUcgGgGCGggGCCCg -3'
miRNA:   3'- cuGGUCGUG---------GAGCGGA--CgCGCa-CGGG- -5'
14063 3' -61.5 NC_003521.1 + 154116 0.66 0.752167
Target:  5'- cGAUCAcCGCCUCGUCgucgccGcCGCG-GCCCg -3'
miRNA:   3'- -CUGGUcGUGGAGCGGa-----C-GCGCaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 195993 0.66 0.761161
Target:  5'- cACCAGCcCCaggaGCUgugGCGUGUcGCCCu -3'
miRNA:   3'- cUGGUCGuGGag--CGGa--CGCGCA-CGGG- -5'
14063 3' -61.5 NC_003521.1 + 170950 0.66 0.796053
Target:  5'- uGGCCuGgGCgUgGCgCUGCGCGgcgGCCUc -3'
miRNA:   3'- -CUGGuCgUGgAgCG-GACGCGCa--CGGG- -5'
14063 3' -61.5 NC_003521.1 + 202532 0.66 0.761161
Target:  5'- cGACgAGC-UCUCGCaccugCUGCGCGccgGCCUc -3'
miRNA:   3'- -CUGgUCGuGGAGCG-----GACGCGCa--CGGG- -5'
14063 3' -61.5 NC_003521.1 + 9449 0.66 0.743079
Target:  5'- cACUAGCACCUCuacaguaCCUGCGaGU-CCCa -3'
miRNA:   3'- cUGGUCGUGGAGc------GGACGCgCAcGGG- -5'
14063 3' -61.5 NC_003521.1 + 143613 0.66 0.770054
Target:  5'- cACCGGCugCU-GCCUGCuGCacaacgucacgGUGCaCCg -3'
miRNA:   3'- cUGGUCGugGAgCGGACG-CG-----------CACG-GG- -5'
14063 3' -61.5 NC_003521.1 + 55240 0.66 0.770054
Target:  5'- aGCCccgAGCGgCUCGCCgGCGa--GCCCg -3'
miRNA:   3'- cUGG---UCGUgGAGCGGaCGCgcaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 57394 0.66 0.761161
Target:  5'- cGAUCucGCGCCacagCGCC-GUGCGgucGCCCa -3'
miRNA:   3'- -CUGGu-CGUGGa---GCGGaCGCGCa--CGGG- -5'
14063 3' -61.5 NC_003521.1 + 30641 0.66 0.778839
Target:  5'- cACCGGCGgCgCGCCUGCuCGUcauggcGCCUa -3'
miRNA:   3'- cUGGUCGUgGaGCGGACGcGCA------CGGG- -5'
14063 3' -61.5 NC_003521.1 + 154941 0.66 0.752167
Target:  5'- cGACaC-GCGCCUcuacCGCgaGCGCcugGUGCCCu -3'
miRNA:   3'- -CUG-GuCGUGGA----GCGgaCGCG---CACGGG- -5'
14063 3' -61.5 NC_003521.1 + 132404 0.66 0.742165
Target:  5'- -uCCGGCAgacgcugUUUCGCCUGUGCGgcgacGCCg -3'
miRNA:   3'- cuGGUCGU-------GGAGCGGACGCGCa----CGGg -5'
14063 3' -61.5 NC_003521.1 + 216178 0.66 0.752167
Target:  5'- cACCAGCGCCaggacgaaggCGCUgagcaccgGCGCGggGUCCu -3'
miRNA:   3'- cUGGUCGUGGa---------GCGGa-------CGCGCa-CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.