miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14063 3' -61.5 NC_003521.1 + 358 0.67 0.724653
Target:  5'- uGCCGGagGCggCGCCUGCGacCGcUGCCCg -3'
miRNA:   3'- cUGGUCg-UGgaGCGGACGC--GC-ACGGG- -5'
14063 3' -61.5 NC_003521.1 + 1073 0.71 0.470865
Target:  5'- cGCCAGC-UCUCGCC-GCGCGacCCCu -3'
miRNA:   3'- cUGGUCGuGGAGCGGaCGCGCacGGG- -5'
14063 3' -61.5 NC_003521.1 + 1613 0.68 0.648739
Target:  5'- cACCAGCGCCU-GUgCUGCGgGUGgCUg -3'
miRNA:   3'- cUGGUCGUGGAgCG-GACGCgCACgGG- -5'
14063 3' -61.5 NC_003521.1 + 2304 0.66 0.761161
Target:  5'- cGACgAGC-UCUCGCaccugCUGCGCGccgGCCUc -3'
miRNA:   3'- -CUGgUCGuGGAGCG-----GACGCGCa--CGGG- -5'
14063 3' -61.5 NC_003521.1 + 4355 0.68 0.629501
Target:  5'- cGCCGGCGgUUCGCUcauCGCG-GCCCg -3'
miRNA:   3'- cUGGUCGUgGAGCGGac-GCGCaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 5301 0.68 0.66793
Target:  5'- -cCCGGCAUguUUCGCggggGCgGCGUGCCCc -3'
miRNA:   3'- cuGGUCGUG--GAGCGga--CG-CGCACGGG- -5'
14063 3' -61.5 NC_003521.1 + 6692 0.67 0.724653
Target:  5'- gGGCCuGCGCC-CGCgaGCGC-UGCUg -3'
miRNA:   3'- -CUGGuCGUGGaGCGgaCGCGcACGGg -5'
14063 3' -61.5 NC_003521.1 + 9449 0.66 0.743079
Target:  5'- cACUAGCACCUCuacaguaCCUGCGaGU-CCCa -3'
miRNA:   3'- cUGGUCGUGGAGc------GGACGCgCAcGGG- -5'
14063 3' -61.5 NC_003521.1 + 12748 0.74 0.347272
Target:  5'- -uCCGGCGCCUCGgacgugagcugggaCCcGCGCGUGCgCCc -3'
miRNA:   3'- cuGGUCGUGGAGC--------------GGaCGCGCACG-GG- -5'
14063 3' -61.5 NC_003521.1 + 13224 0.73 0.395292
Target:  5'- cGACCGGCGCCcaaGCCUGC-CaUGCCUc -3'
miRNA:   3'- -CUGGUCGUGGag-CGGACGcGcACGGG- -5'
14063 3' -61.5 NC_003521.1 + 14353 0.7 0.525106
Target:  5'- cGACCAGUACCUgGUgCUG-GUG-GCCCa -3'
miRNA:   3'- -CUGGUCGUGGAgCG-GACgCGCaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 16008 0.66 0.796053
Target:  5'- cGCCAGCcgcagacgcCCUaCGCCacGCGCGU-CCCg -3'
miRNA:   3'- cUGGUCGu--------GGA-GCGGa-CGCGCAcGGG- -5'
14063 3' -61.5 NC_003521.1 + 16234 0.67 0.733905
Target:  5'- uGGCCGagugcgaaauGUACCUCaGCCUGCggcuGCGcUGCCg -3'
miRNA:   3'- -CUGGU----------CGUGGAG-CGGACG----CGC-ACGGg -5'
14063 3' -61.5 NC_003521.1 + 16409 0.67 0.733905
Target:  5'- cACgCAGCGCCUgGCCgGCGagGUGUaCCg -3'
miRNA:   3'- cUG-GUCGUGGAgCGGaCGCg-CACG-GG- -5'
14063 3' -61.5 NC_003521.1 + 17353 0.68 0.66793
Target:  5'- -cCCGG-GCCgugaCGCCgGCGCGgcgGCCCa -3'
miRNA:   3'- cuGGUCgUGGa---GCGGaCGCGCa--CGGG- -5'
14063 3' -61.5 NC_003521.1 + 18170 0.66 0.761161
Target:  5'- gGGCagcguggaGGCGCUgcgCGCCUGC-CG-GCCCu -3'
miRNA:   3'- -CUGg-------UCGUGGa--GCGGACGcGCaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 18794 0.68 0.639123
Target:  5'- gGGCCAGCGCU--GCUUuCGCGUGgCCa -3'
miRNA:   3'- -CUGGUCGUGGagCGGAcGCGCACgGG- -5'
14063 3' -61.5 NC_003521.1 + 19375 0.68 0.629501
Target:  5'- aACgAGCACCaa--UUGUGCGUGCCCu -3'
miRNA:   3'- cUGgUCGUGGagcgGACGCGCACGGG- -5'
14063 3' -61.5 NC_003521.1 + 21271 0.67 0.705005
Target:  5'- uGGCCccguaucuggAGCGCUUCGCggucuggCUGCGCGUGgCg -3'
miRNA:   3'- -CUGG----------UCGUGGAGCG-------GACGCGCACgGg -5'
14063 3' -61.5 NC_003521.1 + 21760 0.66 0.743079
Target:  5'- uGCuCAuGCACCUgggCGCCgUG-GCGUGCCUg -3'
miRNA:   3'- cUG-GU-CGUGGA---GCGG-ACgCGCACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.