miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14063 5' -49.5 NC_003521.1 + 149524 1.1 0.017456
Target:  5'- cACACGCAUACGCGCGUAUAGUAACCGa -3'
miRNA:   3'- -UGUGCGUAUGCGCGCAUAUCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 110204 0.78 0.778745
Target:  5'- cGCugGCGUGCGCGUGUuu-GUAcuuGCCGu -3'
miRNA:   3'- -UGugCGUAUGCGCGCAuauCAU---UGGC- -5'
14063 5' -49.5 NC_003521.1 + 149374 0.77 0.8063
Target:  5'- uGCGCGCGUAUGCGCGcAUAGaaAGCCc -3'
miRNA:   3'- -UGUGCGUAUGCGCGCaUAUCa-UUGGc -5'
14063 5' -49.5 NC_003521.1 + 49343 0.77 0.823876
Target:  5'- aAUGC-CGUcUGCGCGUGUGGUGGCCGg -3'
miRNA:   3'- -UGUGcGUAuGCGCGCAUAUCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 190424 0.76 0.856823
Target:  5'- aGCGCGUcgACG-GCGaGUAGUAGCCGc -3'
miRNA:   3'- -UGUGCGuaUGCgCGCaUAUCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 91457 0.76 0.857605
Target:  5'- uGCGCGCAUACGCGCGcagcucgcggguGUAugCGu -3'
miRNA:   3'- -UGUGCGUAUGCGCGCauau--------CAUugGC- -5'
14063 5' -49.5 NC_003521.1 + 162872 0.76 0.879373
Target:  5'- aACGCGCAgggGCGCGCGcagGUGG--GCCGc -3'
miRNA:   3'- -UGUGCGUa--UGCGCGCa--UAUCauUGGC- -5'
14063 5' -49.5 NC_003521.1 + 91284 0.76 0.882229
Target:  5'- cGCAUGCGcggucucgguuacuaUACGCGCGUAUGcGUGugCGc -3'
miRNA:   3'- -UGUGCGU---------------AUGCGCGCAUAU-CAUugGC- -5'
14063 5' -49.5 NC_003521.1 + 67976 0.75 0.912395
Target:  5'- --gUGCAUAgGCGUGUAU-GUGACCGa -3'
miRNA:   3'- uguGCGUAUgCGCGCAUAuCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 80377 0.74 0.928793
Target:  5'- uACAUGCgacGUugGCGCGUGUAGaucaaauaaaugaUAACCa -3'
miRNA:   3'- -UGUGCG---UAugCGCGCAUAUC-------------AUUGGc -5'
14063 5' -49.5 NC_003521.1 + 155552 0.73 0.948471
Target:  5'- cCACGuCAgccgGCGCGCGgagcgGGUAGCCa -3'
miRNA:   3'- uGUGC-GUa---UGCGCGCaua--UCAUUGGc -5'
14063 5' -49.5 NC_003521.1 + 22795 0.73 0.948471
Target:  5'- -gACGUAgcuaucCGCGCGUGaAGUGACCGc -3'
miRNA:   3'- ugUGCGUau----GCGCGCAUaUCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 213781 0.73 0.952656
Target:  5'- aGCGCGUAgACGCGCaUGUGGacGCCGa -3'
miRNA:   3'- -UGUGCGUaUGCGCGcAUAUCauUGGC- -5'
14063 5' -49.5 NC_003521.1 + 16712 0.73 0.952656
Target:  5'- gACGCGCGUgAUGCGCGgcgAGUucggcGACCGc -3'
miRNA:   3'- -UGUGCGUA-UGCGCGCauaUCA-----UUGGC- -5'
14063 5' -49.5 NC_003521.1 + 224119 0.73 0.956223
Target:  5'- cCGCGCAUcACGCGCGUcugccacAUGGUGaaggcgucccaGCCGu -3'
miRNA:   3'- uGUGCGUA-UGCGCGCA-------UAUCAU-----------UGGC- -5'
14063 5' -49.5 NC_003521.1 + 119236 0.73 0.958867
Target:  5'- aGCugGUGUgcucgcuggagaacACGCGCGUggucaagaugcagGUGGUGGCCGa -3'
miRNA:   3'- -UGugCGUA--------------UGCGCGCA-------------UAUCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 125036 0.72 0.963821
Target:  5'- cGCGgGUAUcCGCGCGUGUGGU--CCGu -3'
miRNA:   3'- -UGUgCGUAuGCGCGCAUAUCAuuGGC- -5'
14063 5' -49.5 NC_003521.1 + 199465 0.72 0.970152
Target:  5'- gGCGCGCGUAgGUGCGacgGUGGaUGACgCGa -3'
miRNA:   3'- -UGUGCGUAUgCGCGCa--UAUC-AUUG-GC- -5'
14063 5' -49.5 NC_003521.1 + 184605 0.72 0.970152
Target:  5'- gGCGCGCAUAcaguauCGUGCGUGcGGUAcagaccugcGCCGu -3'
miRNA:   3'- -UGUGCGUAU------GCGCGCAUaUCAU---------UGGC- -5'
14063 5' -49.5 NC_003521.1 + 150749 0.72 0.972448
Target:  5'- cGCGCGCGUGCGCGCccgcccgcGUGugCGc -3'
miRNA:   3'- -UGUGCGUAUGCGCGcauau---CAUugGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.