miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14063 5' -49.5 NC_003521.1 + 17342 0.68 0.998244
Target:  5'- -gGCGCA-ACGCGC---UGGUGGCCa -3'
miRNA:   3'- ugUGCGUaUGCGCGcauAUCAUUGGc -5'
14063 5' -49.5 NC_003521.1 + 239807 0.71 0.984364
Target:  5'- uGCGCgGCGUgauGCGCGCGUAgaagccGUAcgGCCGg -3'
miRNA:   3'- -UGUG-CGUA---UGCGCGCAUau----CAU--UGGC- -5'
14063 5' -49.5 NC_003521.1 + 240395 0.71 0.984364
Target:  5'- -aGCGCAgGCGUGCGUGU-GUGAgcuCCGa -3'
miRNA:   3'- ugUGCGUaUGCGCGCAUAuCAUU---GGC- -5'
14063 5' -49.5 NC_003521.1 + 222256 0.7 0.991436
Target:  5'- aGCGCGCucuccagcugcGCGCGCGUgAUGGUGcCCa -3'
miRNA:   3'- -UGUGCGua---------UGCGCGCA-UAUCAUuGGc -5'
14063 5' -49.5 NC_003521.1 + 150110 0.69 0.993683
Target:  5'- -gACGCGacuucaaccccUACGUGCGcUAcAGUAACCGa -3'
miRNA:   3'- ugUGCGU-----------AUGCGCGC-AUaUCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 166275 0.69 0.99529
Target:  5'- gGCACGCGcACgGCGCGgcUGGUccgcguGGCCu -3'
miRNA:   3'- -UGUGCGUaUG-CGCGCauAUCA------UUGGc -5'
14063 5' -49.5 NC_003521.1 + 196099 0.69 0.996547
Target:  5'- aGCACGaaaugcgGCGCGCGgUAUAGauccGCCGg -3'
miRNA:   3'- -UGUGCgua----UGCGCGC-AUAUCau--UGGC- -5'
14063 5' -49.5 NC_003521.1 + 137924 0.68 0.996965
Target:  5'- gGCugGCGggucgcgguucccUGCccgaggagcccgaGCGCGUGUGGUAuGCCGa -3'
miRNA:   3'- -UGugCGU-------------AUG-------------CGCGCAUAUCAU-UGGC- -5'
14063 5' -49.5 NC_003521.1 + 51875 0.68 0.997063
Target:  5'- cGCugGCAUugGUGuCGUugccgaaugGUAGUAACa- -3'
miRNA:   3'- -UGugCGUAugCGC-GCA---------UAUCAUUGgc -5'
14063 5' -49.5 NC_003521.1 + 155035 0.71 0.980365
Target:  5'- uACACGCAgaacaagaGCGUGCGUAaAGgcAUCGa -3'
miRNA:   3'- -UGUGCGUa-------UGCGCGCAUaUCauUGGC- -5'
14063 5' -49.5 NC_003521.1 + 200236 0.72 0.975648
Target:  5'- cCGCGCAgcgagugugGCGCGUGUuugccGUGGCCGg -3'
miRNA:   3'- uGUGCGUa--------UGCGCGCAuau--CAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 184605 0.72 0.970152
Target:  5'- gGCGCGCAUAcaguauCGUGCGUGcGGUAcagaccugcGCCGu -3'
miRNA:   3'- -UGUGCGUAU------GCGCGCAUaUCAU---------UGGC- -5'
14063 5' -49.5 NC_003521.1 + 91457 0.76 0.857605
Target:  5'- uGCGCGCAUACGCGCGcagcucgcggguGUAugCGu -3'
miRNA:   3'- -UGUGCGUAUGCGCGCauau--------CAUugGC- -5'
14063 5' -49.5 NC_003521.1 + 91284 0.76 0.882229
Target:  5'- cGCAUGCGcggucucgguuacuaUACGCGCGUAUGcGUGugCGc -3'
miRNA:   3'- -UGUGCGU---------------AUGCGCGCAUAU-CAUugGC- -5'
14063 5' -49.5 NC_003521.1 + 67976 0.75 0.912395
Target:  5'- --gUGCAUAgGCGUGUAU-GUGACCGa -3'
miRNA:   3'- uguGCGUAUgCGCGCAUAuCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 80377 0.74 0.928793
Target:  5'- uACAUGCgacGUugGCGCGUGUAGaucaaauaaaugaUAACCa -3'
miRNA:   3'- -UGUGCG---UAugCGCGCAUAUC-------------AUUGGc -5'
14063 5' -49.5 NC_003521.1 + 22795 0.73 0.948471
Target:  5'- -gACGUAgcuaucCGCGCGUGaAGUGACCGc -3'
miRNA:   3'- ugUGCGUau----GCGCGCAUaUCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 213781 0.73 0.952656
Target:  5'- aGCGCGUAgACGCGCaUGUGGacGCCGa -3'
miRNA:   3'- -UGUGCGUaUGCGCGcAUAUCauUGGC- -5'
14063 5' -49.5 NC_003521.1 + 224119 0.73 0.956223
Target:  5'- cCGCGCAUcACGCGCGUcugccacAUGGUGaaggcgucccaGCCGu -3'
miRNA:   3'- uGUGCGUA-UGCGCGCA-------UAUCAU-----------UGGC- -5'
14063 5' -49.5 NC_003521.1 + 125036 0.72 0.963821
Target:  5'- cGCGgGUAUcCGCGCGUGUGGU--CCGu -3'
miRNA:   3'- -UGUgCGUAuGCGCGCAUAUCAuuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.