miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14063 5' -49.5 NC_003521.1 + 8 0.72 0.975648
Target:  5'- cCGCGCAgcgagugugGCGCGUGUuugccGUGGCCGg -3'
miRNA:   3'- uGUGCGUa--------UGCGCGCAuau--CAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 1021 0.67 0.998996
Target:  5'- cGCGCGCAUcACGCcGCGcagccAGaUGGCCGg -3'
miRNA:   3'- -UGUGCGUA-UGCG-CGCaua--UC-AUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 16712 0.73 0.952656
Target:  5'- gACGCGCGUgAUGCGCGgcgAGUucggcGACCGc -3'
miRNA:   3'- -UGUGCGUA-UGCGCGCauaUCA-----UUGGC- -5'
14063 5' -49.5 NC_003521.1 + 17342 0.68 0.998244
Target:  5'- -gGCGCA-ACGCGC---UGGUGGCCa -3'
miRNA:   3'- ugUGCGUaUGCGCGcauAUCAUUGGc -5'
14063 5' -49.5 NC_003521.1 + 22412 0.71 0.986116
Target:  5'- cGCugGcCAUGCuGCGCGgc--GUGGCCGa -3'
miRNA:   3'- -UGugC-GUAUG-CGCGCauauCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 22795 0.73 0.948471
Target:  5'- -gACGUAgcuaucCGCGCGUGaAGUGACCGc -3'
miRNA:   3'- ugUGCGUau----GCGCGCAUaUCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 30170 0.67 0.999327
Target:  5'- uCACGCGUugucgcaugaGCGCGCGguugacGUAGaaGGCCGa -3'
miRNA:   3'- uGUGCGUA----------UGCGCGCa-----UAUCa-UUGGC- -5'
14063 5' -49.5 NC_003521.1 + 31711 0.67 0.999176
Target:  5'- gGCA-GCAUGUGCGCGUGcUGGgacGCCGc -3'
miRNA:   3'- -UGUgCGUAUGCGCGCAU-AUCau-UGGC- -5'
14063 5' -49.5 NC_003521.1 + 39580 0.71 0.984364
Target:  5'- uGCGCgGCGUgauGCGCGCGUAgaagccGUAcgGCCGg -3'
miRNA:   3'- -UGUG-CGUA---UGCGCGCAUau----CAU--UGGC- -5'
14063 5' -49.5 NC_003521.1 + 40167 0.71 0.984364
Target:  5'- -aGCGCAgGCGUGCGUGU-GUGAgcuCCGa -3'
miRNA:   3'- ugUGCGUaUGCGCGCAUAuCAUU---GGC- -5'
14063 5' -49.5 NC_003521.1 + 49343 0.77 0.823876
Target:  5'- aAUGC-CGUcUGCGCGUGUGGUGGCCGg -3'
miRNA:   3'- -UGUGcGUAuGCGCGCAUAUCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 51875 0.68 0.997063
Target:  5'- cGCugGCAUugGUGuCGUugccgaaugGUAGUAACa- -3'
miRNA:   3'- -UGugCGUAugCGC-GCA---------UAUCAUUGgc -5'
14063 5' -49.5 NC_003521.1 + 53349 0.7 0.992729
Target:  5'- cCACGCcgGCGCGgCGgcggAGggGCCGa -3'
miRNA:   3'- uGUGCGuaUGCGC-GCaua-UCauUGGC- -5'
14063 5' -49.5 NC_003521.1 + 55613 0.66 0.999816
Target:  5'- uACACGCAguccCGCGCGgcccac-ACCGa -3'
miRNA:   3'- -UGUGCGUau--GCGCGCauaucauUGGC- -5'
14063 5' -49.5 NC_003521.1 + 67976 0.75 0.912395
Target:  5'- --gUGCAUAgGCGUGUAU-GUGACCGa -3'
miRNA:   3'- uguGCGUAUgCGCGCAUAuCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 68179 0.67 0.998996
Target:  5'- aGCGCGCAgaccaagcggGgGCGCGUG-AG-GACCGa -3'
miRNA:   3'- -UGUGCGUa---------UgCGCGCAUaUCaUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 78999 0.66 0.999777
Target:  5'- gGCACGg--GC-CGCGUAccGUAGCCGu -3'
miRNA:   3'- -UGUGCguaUGcGCGCAUauCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 80377 0.74 0.928793
Target:  5'- uACAUGCgacGUugGCGCGUGUAGaucaaauaaaugaUAACCa -3'
miRNA:   3'- -UGUGCG---UAugCGCGCAUAUC-------------AUUGGc -5'
14063 5' -49.5 NC_003521.1 + 85791 0.69 0.99529
Target:  5'- cGCACGCucuUGUucuGCGUGUAGUggUCGu -3'
miRNA:   3'- -UGUGCGuauGCG---CGCAUAUCAuuGGC- -5'
14063 5' -49.5 NC_003521.1 + 86881 0.7 0.990478
Target:  5'- gACAC-CAUGacgGCGCGgcgGGUGGCCGa -3'
miRNA:   3'- -UGUGcGUAUg--CGCGCauaUCAUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.