miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14064 5' -52.7 NC_003521.1 + 237405 0.71 0.89715
Target:  5'- uGGCGGGGGucugagUGGCcccaucCCCGGAUg -3'
miRNA:   3'- -CUGUCCCCuuaaa-ACCGuu----GGGCCUG- -5'
14064 5' -52.7 NC_003521.1 + 198319 0.67 0.984975
Target:  5'- gGGguGGGGGAUg--GGCGgcuaaACCUGuGACg -3'
miRNA:   3'- -CUguCCCCUUAaaaCCGU-----UGGGC-CUG- -5'
14064 5' -52.7 NC_003521.1 + 188688 0.66 0.98958
Target:  5'- gGGCGGGGGAuacgcgGGU--CCCGuGGCg -3'
miRNA:   3'- -CUGUCCCCUuaaaa-CCGuuGGGC-CUG- -5'
14064 5' -52.7 NC_003521.1 + 181885 0.67 0.978963
Target:  5'- gGGCcuGGuGGAGUUcgagGcGCAGCCCGGAUc -3'
miRNA:   3'- -CUGu-CC-CCUUAAaa--C-CGUUGGGCCUG- -5'
14064 5' -52.7 NC_003521.1 + 164037 0.7 0.921338
Target:  5'- aGCuGGGGAAUUggUGGUGGCCuCGGcCa -3'
miRNA:   3'- cUGuCCCCUUAAa-ACCGUUGG-GCCuG- -5'
14064 5' -52.7 NC_003521.1 + 162315 0.66 0.991869
Target:  5'- aGCGGGGGGAUUcccUacuacccgcaggcGGCGACUgCGGGCg -3'
miRNA:   3'- cUGUCCCCUUAAa--A-------------CCGUUGG-GCCUG- -5'
14064 5' -52.7 NC_003521.1 + 162220 0.68 0.968391
Target:  5'- aGACGGGGGG----UGGUAGCgCCGacGGCg -3'
miRNA:   3'- -CUGUCCCCUuaaaACCGUUG-GGC--CUG- -5'
14064 5' -52.7 NC_003521.1 + 155404 0.66 0.99084
Target:  5'- cGGCGGGGGGcug--GGCA--CCGGAg -3'
miRNA:   3'- -CUGUCCCCUuaaaaCCGUugGGCCUg -5'
14064 5' -52.7 NC_003521.1 + 148990 0.69 0.950469
Target:  5'- --aGGGGGGAUg--GGagagcaaAACCCGGAUg -3'
miRNA:   3'- cugUCCCCUUAaaaCCg------UUGGGCCUG- -5'
14064 5' -52.7 NC_003521.1 + 148632 0.72 0.850888
Target:  5'- gGGCGGGGGAGgggaggccagGGCAucgccccgaccCCCGGGCg -3'
miRNA:   3'- -CUGUCCCCUUaaaa------CCGUu----------GGGCCUG- -5'
14064 5' -52.7 NC_003521.1 + 148397 0.73 0.829683
Target:  5'- aGGCuGGGGggUgagGGCuccACCCGGGu -3'
miRNA:   3'- -CUGuCCCCuuAaaaCCGu--UGGGCCUg -5'
14064 5' -52.7 NC_003521.1 + 148321 0.73 0.803713
Target:  5'- aGCGGGGGugaggUGGCGgaccacGCCCGGAg -3'
miRNA:   3'- cUGUCCCCuuaaaACCGU------UGGGCCUg -5'
14064 5' -52.7 NC_003521.1 + 147166 1.09 0.009108
Target:  5'- gGACAGGGGAAUUUUGGCAACCCGGACc -3'
miRNA:   3'- -CUGUCCCCUUAAAACCGUUGGGCCUG- -5'
14064 5' -52.7 NC_003521.1 + 137276 0.66 0.993915
Target:  5'- aGCGGGGGcccca--GCGACCUGGAg -3'
miRNA:   3'- cUGUCCCCuuaaaacCGUUGGGCCUg -5'
14064 5' -52.7 NC_003521.1 + 125743 0.69 0.954501
Target:  5'- cGCAGGGcaGggUUUcugGGCGACgUCGGGCu -3'
miRNA:   3'- cUGUCCC--CuuAAAa--CCGUUG-GGCCUG- -5'
14064 5' -52.7 NC_003521.1 + 122766 0.67 0.978963
Target:  5'- gGGCAcGGGGA----UGGCGGCCgagagcaaugCGGACc -3'
miRNA:   3'- -CUGU-CCCCUuaaaACCGUUGG----------GCCUG- -5'
14064 5' -52.7 NC_003521.1 + 122013 0.67 0.986656
Target:  5'- uGGCAGGGGGu------CGACUCGGGCg -3'
miRNA:   3'- -CUGUCCCCUuaaaaccGUUGGGCCUG- -5'
14064 5' -52.7 NC_003521.1 + 120741 0.7 0.941709
Target:  5'- -cCAGGGGcaccaggUGGCcGCCUGGAUg -3'
miRNA:   3'- cuGUCCCCuuaaa--ACCGuUGGGCCUG- -5'
14064 5' -52.7 NC_003521.1 + 109023 0.66 0.99084
Target:  5'- uGCAGGGGAAg-UUGGUggUCCaGuACa -3'
miRNA:   3'- cUGUCCCCUUaaAACCGuuGGGcC-UG- -5'
14064 5' -52.7 NC_003521.1 + 105488 0.66 0.993915
Target:  5'- cGCGGGaGGGA----GGCAACCCGcccGACc -3'
miRNA:   3'- cUGUCC-CCUUaaaaCCGUUGGGC---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.