Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14065 | 3' | -55.3 | NC_003521.1 | + | 54566 | 0.66 | 0.961926 |
Target: 5'- cGCUugaCGCGGGUGUGc-GGCC-CGaUCCa -3' miRNA: 3'- aUGA---GCGCCUACACucUCGGuGC-AGG- -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 128906 | 0.7 | 0.865441 |
Target: 5'- uUGCUgCGCuGGAUGcgguUGAGGGCCugGcgcgCCa -3' miRNA: 3'- -AUGA-GCG-CCUAC----ACUCUCGGugCa---GG- -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 86999 | 0.7 | 0.865441 |
Target: 5'- gGCg-GCGG-UGaUGAGGGCCACGUgCu -3' miRNA: 3'- aUGagCGCCuAC-ACUCUCGGUGCAgG- -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 52410 | 0.69 | 0.879676 |
Target: 5'- --gUCGCGGAggaUGGGAGUgGgGUCCa -3' miRNA: 3'- augAGCGCCUac-ACUCUCGgUgCAGG- -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 172278 | 0.69 | 0.899448 |
Target: 5'- aGCUgGUGGGUGUGGGucuccuUCAUGUCCc -3' miRNA: 3'- aUGAgCGCCUACACUCuc----GGUGCAGG- -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 83446 | 0.68 | 0.911533 |
Target: 5'- gUGCUCGuCGuagGUGAGAcucugGcCCACGUCCa -3' miRNA: 3'- -AUGAGC-GCcuaCACUCU-----C-GGUGCAGG- -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 137501 | 0.68 | 0.92272 |
Target: 5'- cGC-CGCGaGGUcUGGGAcgugcagcGCCGCGUCCg -3' miRNA: 3'- aUGaGCGC-CUAcACUCU--------CGGUGCAGG- -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 118924 | 0.68 | 0.932999 |
Target: 5'- cGC-CGCGGc-GUGGGcGGCgGCGUCCc -3' miRNA: 3'- aUGaGCGCCuaCACUC-UCGgUGCAGG- -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 103816 | 0.67 | 0.937798 |
Target: 5'- gACcgUGCGGAacagGUGgcuguacaGGGGCCGCGUCUc -3' miRNA: 3'- aUGa-GCGCCUa---CAC--------UCUCGGUGCAGG- -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 217767 | 0.7 | 0.858022 |
Target: 5'- ---aCGCGGGUG-GAGAGCgG-GUCCa -3' miRNA: 3'- augaGCGCCUACaCUCUCGgUgCAGG- -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 134740 | 0.7 | 0.858022 |
Target: 5'- -cCUUGCGGuuggugGUGAaGGCCGgGUCCa -3' miRNA: 3'- auGAGCGCCua----CACUcUCGGUgCAGG- -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 122224 | 0.7 | 0.858022 |
Target: 5'- cUGCgagCGCGGGUGccggcgacUGAGcgccGCCACGUCg -3' miRNA: 3'- -AUGa--GCGCCUAC--------ACUCu---CGGUGCAGg -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 125843 | 0.74 | 0.625745 |
Target: 5'- gGCUCGCGG-UGgucguacagcgccuUGGuGGCCGCGUCCg -3' miRNA: 3'- aUGAGCGCCuAC--------------ACUcUCGGUGCAGG- -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 236188 | 0.72 | 0.755796 |
Target: 5'- gAUcCGCuGgcGUGGGAGCCACGUCg -3' miRNA: 3'- aUGaGCGcCuaCACUCUCGGUGCAGg -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 115917 | 0.71 | 0.783304 |
Target: 5'- aGCUCGCGGuagagGUGAG-GCCaguacgguugggGCGUCUu -3' miRNA: 3'- aUGAGCGCCua---CACUCuCGG------------UGCAGG- -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 150721 | 0.71 | 0.809652 |
Target: 5'- gGCUCuCGGccGUG--GGCCACGUCCu -3' miRNA: 3'- aUGAGcGCCuaCACucUCGGUGCAGG- -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 211581 | 0.7 | 0.834623 |
Target: 5'- cGCUCGCGGcgGUGuccccGGAG--ACGUCCu -3' miRNA: 3'- aUGAGCGCCuaCAC-----UCUCggUGCAGG- -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 126865 | 0.7 | 0.837838 |
Target: 5'- aGCUCGCGGcaggccugcgucaGUGAGAcGUgCGCGUCCg -3' miRNA: 3'- aUGAGCGCCua-----------CACUCU-CG-GUGCAGG- -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 222996 | 0.7 | 0.850408 |
Target: 5'- cACUUGguaUGGcgGUGGGGGUCGuCGUCCg -3' miRNA: 3'- aUGAGC---GCCuaCACUCUCGGU-GCAGG- -5' |
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14065 | 3' | -55.3 | NC_003521.1 | + | 93915 | 0.7 | 0.858022 |
Target: 5'- gGCUCGCGuGAUGUGAcguCCGCaUCCg -3' miRNA: 3'- aUGAGCGC-CUACACUcucGGUGcAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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