miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14065 3' -55.3 NC_003521.1 + 13903 0.67 0.94672
Target:  5'- gGCccggCGCGGA---GGGGGCCGCGgaggCCg -3'
miRNA:   3'- aUGa---GCGCCUacaCUCUCGGUGCa---GG- -5'
14065 3' -55.3 NC_003521.1 + 27412 0.67 0.950847
Target:  5'- cUGCUCGCGGGUGcUGA---CCAgCGUCUu -3'
miRNA:   3'- -AUGAGCGCCUAC-ACUcucGGU-GCAGG- -5'
14065 3' -55.3 NC_003521.1 + 36425 0.67 0.942371
Target:  5'- -uUUCGCGGucg-GAGGGCCGCGg-- -3'
miRNA:   3'- auGAGCGCCuacaCUCUCGGUGCagg -5'
14065 3' -55.3 NC_003521.1 + 36808 0.68 0.91724
Target:  5'- cGCUCGCGGAcGgcgGAcucgggcauGAGCUcguCGUCCa -3'
miRNA:   3'- aUGAGCGCCUaCa--CU---------CUCGGu--GCAGG- -5'
14065 3' -55.3 NC_003521.1 + 43671 0.68 0.916117
Target:  5'- gGCccagCGCGGAacuuccagcAGGGCCACGUCCc -3'
miRNA:   3'- aUGa---GCGCCUacac-----UCUCGGUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 44806 0.69 0.905602
Target:  5'- cGCUgaGCGGAUGgccgGAGGGCgaCACG-CCa -3'
miRNA:   3'- aUGAg-CGCCUACa---CUCUCG--GUGCaGG- -5'
14065 3' -55.3 NC_003521.1 + 49976 0.7 0.834623
Target:  5'- aGCg-GCGGGUGggucgaGGGAGCCGgguCGUCCa -3'
miRNA:   3'- aUGagCGCCUACa-----CUCUCGGU---GCAGG- -5'
14065 3' -55.3 NC_003521.1 + 52410 0.69 0.879676
Target:  5'- --gUCGCGGAggaUGGGAGUgGgGUCCa -3'
miRNA:   3'- augAGCGCCUac-ACUCUCGgUgCAGG- -5'
14065 3' -55.3 NC_003521.1 + 54566 0.66 0.961926
Target:  5'- cGCUugaCGCGGGUGUGc-GGCC-CGaUCCa -3'
miRNA:   3'- aUGA---GCGCCUACACucUCGGuGC-AGG- -5'
14065 3' -55.3 NC_003521.1 + 61255 0.68 0.932999
Target:  5'- aGCgUCGCGG-UGUG-GGGCCAgUGUCg -3'
miRNA:   3'- aUG-AGCGCCuACACuCUCGGU-GCAGg -5'
14065 3' -55.3 NC_003521.1 + 83446 0.68 0.911533
Target:  5'- gUGCUCGuCGuagGUGAGAcucugGcCCACGUCCa -3'
miRNA:   3'- -AUGAGC-GCcuaCACUCU-----C-GGUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 85572 0.72 0.755796
Target:  5'- gGgUUGCGGAUGgaacugGGGGGCCGCacgaagcgGUCCa -3'
miRNA:   3'- aUgAGCGCCUACa-----CUCUCGGUG--------CAGG- -5'
14065 3' -55.3 NC_003521.1 + 86191 0.66 0.970861
Target:  5'- gACUCGCGGGccacgGUGgaggcgaAGGGCgGCGgcacgCCg -3'
miRNA:   3'- aUGAGCGCCUa----CAC-------UCUCGgUGCa----GG- -5'
14065 3' -55.3 NC_003521.1 + 86999 0.7 0.865441
Target:  5'- gGCg-GCGG-UGaUGAGGGCCACGUgCu -3'
miRNA:   3'- aUGagCGCCuAC-ACUCUCGGUGCAgG- -5'
14065 3' -55.3 NC_003521.1 + 93915 0.7 0.858022
Target:  5'- gGCUCGCGuGAUGUGAcguCCGCaUCCg -3'
miRNA:   3'- aUGAGCGC-CUACACUcucGGUGcAGG- -5'
14065 3' -55.3 NC_003521.1 + 103461 0.7 0.858022
Target:  5'- cGCgucCGCGGAUGcggGAGGGCgGC-UCCa -3'
miRNA:   3'- aUGa--GCGCCUACa--CUCUCGgUGcAGG- -5'
14065 3' -55.3 NC_003521.1 + 103816 0.67 0.937798
Target:  5'- gACcgUGCGGAacagGUGgcuguacaGGGGCCGCGUCUc -3'
miRNA:   3'- aUGa-GCGCCUa---CAC--------UCUCGGUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 107040 0.67 0.942371
Target:  5'- -uCUUGCGG-UG-GAGGaaaaacuccGCCGCGUCCc -3'
miRNA:   3'- auGAGCGCCuACaCUCU---------CGGUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 108096 0.74 0.645698
Target:  5'- gUGCUCGCGGAcacuuccgucgccuUGgaccAGuGCCGCGUCCc -3'
miRNA:   3'- -AUGAGCGCCU--------------ACac--UCuCGGUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 108448 0.66 0.976315
Target:  5'- -cCUCGCGGGUGUGcGGcguGCCGCu--- -3'
miRNA:   3'- auGAGCGCCUACAC-UCu--CGGUGcagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.