miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14065 3' -55.3 NC_003521.1 + 54566 0.66 0.961926
Target:  5'- cGCUugaCGCGGGUGUGc-GGCC-CGaUCCa -3'
miRNA:   3'- aUGA---GCGCCUACACucUCGGuGC-AGG- -5'
14065 3' -55.3 NC_003521.1 + 128906 0.7 0.865441
Target:  5'- uUGCUgCGCuGGAUGcgguUGAGGGCCugGcgcgCCa -3'
miRNA:   3'- -AUGA-GCG-CCUAC----ACUCUCGGugCa---GG- -5'
14065 3' -55.3 NC_003521.1 + 86999 0.7 0.865441
Target:  5'- gGCg-GCGG-UGaUGAGGGCCACGUgCu -3'
miRNA:   3'- aUGagCGCCuAC-ACUCUCGGUGCAgG- -5'
14065 3' -55.3 NC_003521.1 + 52410 0.69 0.879676
Target:  5'- --gUCGCGGAggaUGGGAGUgGgGUCCa -3'
miRNA:   3'- augAGCGCCUac-ACUCUCGgUgCAGG- -5'
14065 3' -55.3 NC_003521.1 + 172278 0.69 0.899448
Target:  5'- aGCUgGUGGGUGUGGGucuccuUCAUGUCCc -3'
miRNA:   3'- aUGAgCGCCUACACUCuc----GGUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 83446 0.68 0.911533
Target:  5'- gUGCUCGuCGuagGUGAGAcucugGcCCACGUCCa -3'
miRNA:   3'- -AUGAGC-GCcuaCACUCU-----C-GGUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 137501 0.68 0.92272
Target:  5'- cGC-CGCGaGGUcUGGGAcgugcagcGCCGCGUCCg -3'
miRNA:   3'- aUGaGCGC-CUAcACUCU--------CGGUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 118924 0.68 0.932999
Target:  5'- cGC-CGCGGc-GUGGGcGGCgGCGUCCc -3'
miRNA:   3'- aUGaGCGCCuaCACUC-UCGgUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 103816 0.67 0.937798
Target:  5'- gACcgUGCGGAacagGUGgcuguacaGGGGCCGCGUCUc -3'
miRNA:   3'- aUGa-GCGCCUa---CAC--------UCUCGGUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 217767 0.7 0.858022
Target:  5'- ---aCGCGGGUG-GAGAGCgG-GUCCa -3'
miRNA:   3'- augaGCGCCUACaCUCUCGgUgCAGG- -5'
14065 3' -55.3 NC_003521.1 + 134740 0.7 0.858022
Target:  5'- -cCUUGCGGuuggugGUGAaGGCCGgGUCCa -3'
miRNA:   3'- auGAGCGCCua----CACUcUCGGUgCAGG- -5'
14065 3' -55.3 NC_003521.1 + 122224 0.7 0.858022
Target:  5'- cUGCgagCGCGGGUGccggcgacUGAGcgccGCCACGUCg -3'
miRNA:   3'- -AUGa--GCGCCUAC--------ACUCu---CGGUGCAGg -5'
14065 3' -55.3 NC_003521.1 + 125843 0.74 0.625745
Target:  5'- gGCUCGCGG-UGgucguacagcgccuUGGuGGCCGCGUCCg -3'
miRNA:   3'- aUGAGCGCCuAC--------------ACUcUCGGUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 236188 0.72 0.755796
Target:  5'- gAUcCGCuGgcGUGGGAGCCACGUCg -3'
miRNA:   3'- aUGaGCGcCuaCACUCUCGGUGCAGg -5'
14065 3' -55.3 NC_003521.1 + 115917 0.71 0.783304
Target:  5'- aGCUCGCGGuagagGUGAG-GCCaguacgguugggGCGUCUu -3'
miRNA:   3'- aUGAGCGCCua---CACUCuCGG------------UGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 150721 0.71 0.809652
Target:  5'- gGCUCuCGGccGUG--GGCCACGUCCu -3'
miRNA:   3'- aUGAGcGCCuaCACucUCGGUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 211581 0.7 0.834623
Target:  5'- cGCUCGCGGcgGUGuccccGGAG--ACGUCCu -3'
miRNA:   3'- aUGAGCGCCuaCAC-----UCUCggUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 126865 0.7 0.837838
Target:  5'- aGCUCGCGGcaggccugcgucaGUGAGAcGUgCGCGUCCg -3'
miRNA:   3'- aUGAGCGCCua-----------CACUCU-CG-GUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 222996 0.7 0.850408
Target:  5'- cACUUGguaUGGcgGUGGGGGUCGuCGUCCg -3'
miRNA:   3'- aUGAGC---GCCuaCACUCUCGGU-GCAGG- -5'
14065 3' -55.3 NC_003521.1 + 93915 0.7 0.858022
Target:  5'- gGCUCGCGuGAUGUGAcguCCGCaUCCg -3'
miRNA:   3'- aUGAGCGC-CUACACUcucGGUGcAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.