miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14065 3' -55.3 NC_003521.1 + 146868 1.11 0.004127
Target:  5'- uUACUCGCGGAUGUGAGAGCCACGUCCg -3'
miRNA:   3'- -AUGAGCGCCUACACUCUCGGUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 121319 0.78 0.455615
Target:  5'- -gUUCGUGGGagGUGAaGGCCACGUCCa -3'
miRNA:   3'- auGAGCGCCUa-CACUcUCGGUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 125843 0.74 0.625745
Target:  5'- gGCUCGCGG-UGgucguacagcgccuUGGuGGCCGCGUCCg -3'
miRNA:   3'- aUGAGCGCCuAC--------------ACUcUCGGUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 108096 0.74 0.645698
Target:  5'- gUGCUCGCGGAcacuuccgucgccuUGgaccAGuGCCGCGUCCc -3'
miRNA:   3'- -AUGAGCGCCU--------------ACac--UCuCGGUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 123867 0.72 0.755796
Target:  5'- cGCUCGCGaAUGU-AGAGC-GCGUCCa -3'
miRNA:   3'- aUGAGCGCcUACAcUCUCGgUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 85572 0.72 0.755796
Target:  5'- gGgUUGCGGAUGgaacugGGGGGCCGCacgaagcgGUCCa -3'
miRNA:   3'- aUgAGCGCCUACa-----CUCUCGGUG--------CAGG- -5'
14065 3' -55.3 NC_003521.1 + 236188 0.72 0.755796
Target:  5'- gAUcCGCuGgcGUGGGAGCCACGUCg -3'
miRNA:   3'- aUGaGCGcCuaCACUCUCGGUGCAGg -5'
14065 3' -55.3 NC_003521.1 + 115917 0.71 0.783304
Target:  5'- aGCUCGCGGuagagGUGAG-GCCaguacgguugggGCGUCUu -3'
miRNA:   3'- aUGAGCGCCua---CACUCuCGG------------UGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 150721 0.71 0.809652
Target:  5'- gGCUCuCGGccGUG--GGCCACGUCCu -3'
miRNA:   3'- aUGAGcGCCuaCACucUCGGUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 211581 0.7 0.834623
Target:  5'- cGCUCGCGGcgGUGuccccGGAG--ACGUCCu -3'
miRNA:   3'- aUGAGCGCCuaCAC-----UCUCggUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 49976 0.7 0.834623
Target:  5'- aGCg-GCGGGUGggucgaGGGAGCCGgguCGUCCa -3'
miRNA:   3'- aUGagCGCCUACa-----CUCUCGGU---GCAGG- -5'
14065 3' -55.3 NC_003521.1 + 126865 0.7 0.837838
Target:  5'- aGCUCGCGGcaggccugcgucaGUGAGAcGUgCGCGUCCg -3'
miRNA:   3'- aUGAGCGCCua-----------CACUCU-CG-GUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 222996 0.7 0.850408
Target:  5'- cACUUGguaUGGcgGUGGGGGUCGuCGUCCg -3'
miRNA:   3'- aUGAGC---GCCuaCACUCUCGGU-GCAGG- -5'
14065 3' -55.3 NC_003521.1 + 215433 0.7 0.858022
Target:  5'- -uUUCGCGGGUcUGGGAGCagggUGUCCg -3'
miRNA:   3'- auGAGCGCCUAcACUCUCGgu--GCAGG- -5'
14065 3' -55.3 NC_003521.1 + 103461 0.7 0.858022
Target:  5'- cGCgucCGCGGAUGcggGAGGGCgGC-UCCa -3'
miRNA:   3'- aUGa--GCGCCUACa--CUCUCGgUGcAGG- -5'
14065 3' -55.3 NC_003521.1 + 217767 0.7 0.858022
Target:  5'- ---aCGCGGGUG-GAGAGCgG-GUCCa -3'
miRNA:   3'- augaGCGCCUACaCUCUCGgUgCAGG- -5'
14065 3' -55.3 NC_003521.1 + 122224 0.7 0.858022
Target:  5'- cUGCgagCGCGGGUGccggcgacUGAGcgccGCCACGUCg -3'
miRNA:   3'- -AUGa--GCGCCUAC--------ACUCu---CGGUGCAGg -5'
14065 3' -55.3 NC_003521.1 + 93915 0.7 0.858022
Target:  5'- gGCUCGCGuGAUGUGAcguCCGCaUCCg -3'
miRNA:   3'- aUGAGCGC-CUACACUcucGGUGcAGG- -5'
14065 3' -55.3 NC_003521.1 + 134740 0.7 0.858022
Target:  5'- -cCUUGCGGuuggugGUGAaGGCCGgGUCCa -3'
miRNA:   3'- auGAGCGCCua----CACUcUCGGUgCAGG- -5'
14065 3' -55.3 NC_003521.1 + 86999 0.7 0.865441
Target:  5'- gGCg-GCGG-UGaUGAGGGCCACGUgCu -3'
miRNA:   3'- aUGagCGCCuAC-ACUCUCGGUGCAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.