miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14065 5' -54.8 NC_003521.1 + 146903 1.11 0.005498
Target:  5'- cCCGGAUGCGGACGUCACAUCACGCGAg -3'
miRNA:   3'- -GGCCUACGCCUGCAGUGUAGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 216063 0.78 0.530387
Target:  5'- aCGGAUGCGGGucgauugaUGUCGCGUUACGgGGu -3'
miRNA:   3'- gGCCUACGCCU--------GCAGUGUAGUGCgCU- -5'
14065 5' -54.8 NC_003521.1 + 148801 0.75 0.657019
Target:  5'- gCGGcUGCGGACGuUCAUcgUGCGCGGc -3'
miRNA:   3'- gGCCuACGCCUGC-AGUGuaGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 186626 0.75 0.696052
Target:  5'- gCGGcgGCGGugGUgGCGgcaagucgacgUCGCGCGGc -3'
miRNA:   3'- gGCCuaCGCCugCAgUGU-----------AGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 73569 0.73 0.789026
Target:  5'- gCCGuGGUGCGGGCG-CugGUCAUGaaCGAg -3'
miRNA:   3'- -GGC-CUACGCCUGCaGugUAGUGC--GCU- -5'
14065 5' -54.8 NC_003521.1 + 35797 0.72 0.797739
Target:  5'- aCGGAUccauCGGGCGUCGCggCACGCc- -3'
miRNA:   3'- gGCCUAc---GCCUGCAGUGuaGUGCGcu -5'
14065 5' -54.8 NC_003521.1 + 93939 0.72 0.797739
Target:  5'- uCCgGGAUGCaGACGgacguggcucUCACAUC-CGCGAg -3'
miRNA:   3'- -GG-CCUACGcCUGC----------AGUGUAGuGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 221822 0.72 0.823016
Target:  5'- gCGGG-GCGGGCGUgucucccuCGUCGCGCGGc -3'
miRNA:   3'- gGCCUaCGCCUGCAgu------GUAGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 120355 0.72 0.823017
Target:  5'- gCGGAgacaccUGCGGACGUCGCuguAUUauuugcggcggACGCGAg -3'
miRNA:   3'- gGCCU------ACGCCUGCAGUG---UAG-----------UGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 206722 0.72 0.831131
Target:  5'- gCGGGcgGCGGGC-UCcUAUCGCGCGAu -3'
miRNA:   3'- gGCCUa-CGCCUGcAGuGUAGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 31186 0.72 0.838292
Target:  5'- -gGGAUGCGGugGaUCACGUCGagaaaguCGCa- -3'
miRNA:   3'- ggCCUACGCCugC-AGUGUAGU-------GCGcu -5'
14065 5' -54.8 NC_003521.1 + 182397 0.72 0.838292
Target:  5'- cCCGGcagcgcUGCGGcuuCGUCaaccgccGCAUCACGCGGc -3'
miRNA:   3'- -GGCCu-----ACGCCu--GCAG-------UGUAGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 90787 0.72 0.839079
Target:  5'- cCCGGugcaGCGuGGCGUCGCGcacgugCACGUGAa -3'
miRNA:   3'- -GGCCua--CGC-CUGCAGUGUa-----GUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 193280 0.71 0.876089
Target:  5'- gCGGGUGCcgggacGGGCGUCGgaGUCgGCGCGGg -3'
miRNA:   3'- gGCCUACG------CCUGCAGUg-UAG-UGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 71789 0.71 0.87609
Target:  5'- cCCGGAcGaccaGGACGUCACG-CACGUc- -3'
miRNA:   3'- -GGCCUaCg---CCUGCAGUGUaGUGCGcu -5'
14065 5' -54.8 NC_003521.1 + 185726 0.7 0.882908
Target:  5'- gCCGGGUGCGGAgGUgAUcgCcgaGCGGg -3'
miRNA:   3'- -GGCCUACGCCUgCAgUGuaGug-CGCU- -5'
14065 5' -54.8 NC_003521.1 + 60705 0.7 0.88952
Target:  5'- cCCGGggGCGGcgcGgGUCGCAcCACGCc- -3'
miRNA:   3'- -GGCCuaCGCC---UgCAGUGUaGUGCGcu -5'
14065 5' -54.8 NC_003521.1 + 99248 0.7 0.895924
Target:  5'- aCGG-UGCGcGCGUCGUcgCGCGCGAg -3'
miRNA:   3'- gGCCuACGCcUGCAGUGuaGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 86115 0.7 0.902115
Target:  5'- gCUGGAUgguguucuccucGCGcGCGUCGCA-CACGCGGu -3'
miRNA:   3'- -GGCCUA------------CGCcUGCAGUGUaGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 181397 0.7 0.902115
Target:  5'- gCCGGcgGCGG-CGcCGCuGUCGCGUGc -3'
miRNA:   3'- -GGCCuaCGCCuGCaGUG-UAGUGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.